C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: YKT6 homolog (S. Cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002818 Ykt6-001 ENSMUSG00000002741 10090 + 11:5955693-5967780 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002818
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002818 36.744±2.18 28.924±2.41 16.314±0.82 26.203±4.24 28.176±1.75 33.289±1.33 22.456±0.80 29.353±0.86 19.086±4.15 32.795±3.11 20.833±0.98 34.278±3.52 30.141±8.78 15.589±3.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000J5 CIL_0000J5_0002 CGP 11:5900820-5967780
CIL_0000J6 CIL_0000J6_0002 CGP 11:5955693-6066362

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005484 IEA SNAP receptor activity
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005768 IEA endosome
GO:0005783 ISS endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005887 ISS integral component of plasma membrane
GO:0006888 ISS ER to Golgi vesicle-mediated transport
GO:0006903 ISS vesicle targeting
GO:0006904 ISS vesicle docking involved in exocytosis
GO:0008152 IEA metabolic process
GO:0015031 IEA protein transport
GO:0019706 ISS protein-cysteine S-palmitoyltransferase activity
GO:0031201 IEA SNARE complex
GO:0031410 IEA cytoplasmic vesicle
GO:0042147 IEA retrograde transport, endosome to Golgi
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000223369 YKT6-001 protein_coding Homo_sapiens 0 856
ENST00000421621 YKT6-003 retained_intron Homo_sapiens 0 291
ENST00000447123 YKT6-004 processed_transcript Homo_sapiens 0 706
ENST00000496112 YKT6-002 protein_coding Homo_sapiens 0 568

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