C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calsequestrin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003554 Casq1-001 ENSMUSG00000007122 10090 - 1:172209894-172219868 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003554
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003554 0.387±0.00 0.110±0.00 1.234±0.41 0.681±0.22 152.501±88.87 0.130±0.09 11.372±1.57 5.642±0.39 0.121±0.08 8.263±7.64 1256.890±68.10 0.708±0.44 0.296±0.25 1.152±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IDA calcium ion binding
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005759 IDA mitochondrial matrix
GO:0005794 IEA Golgi apparatus
GO:0006937 TAS regulation of muscle contraction
GO:0007029 IMP endoplasmic reticulum organization
GO:0007519 IEA skeletal muscle tissue development
GO:0009408 IMP response to heat
GO:0010033 IEA response to organic substance
GO:0010880 IDA regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
GO:0014802 IEA terminal cisterna
GO:0014804 IEA terminal cisterna lumen
GO:0014809 IMP regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion
GO:0014870 IEA response to muscle inactivity
GO:0014894 IEA response to denervation involved in regulation of muscle adaptation
GO:0016529 TAS sarcoplasmic reticulum
GO:0030016 IEA myofibril
GO:0030315 IEA T-tubule
GO:0031674 IEA I band
GO:0033018 IDA sarcoplasmic reticulum lumen
GO:0042383 IEA sarcolemma
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045214 IMP sarcomere organization
GO:0051258 ISS protein polymerization
GO:0051282 IEA regulation of sequestering of calcium ion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368078 CASQ1-001 protein_coding Homo_sapiens 0 1749
ENST00000467691 CASQ1-003 protein_coding Homo_sapiens 0 444
ENST00000481081 CASQ1-002 retained_intron Homo_sapiens 0 990

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