C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: immediate early response 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003635 Ier3-001 ENSMUSG00000003541 10090 + 17:35821684-35822923 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003635
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003635 8.690±3.32 10.021±0.92 32.123±9.35 2.994±1.55 10.096±3.03 9.723±0.80 14.585±2.87 14.659±0.60 4.694±4.66 75.597±4.16 5.269±1.13 27.318±8.11 22.394±7.47 0.591±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0002 VISTA 17:35419853-36021785

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001562 IMP response to protozoan
GO:0003085 IMP negative regulation of systemic arterial blood pressure
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006282 IMP regulation of DNA repair
GO:0007095 IMP mitotic G2 DNA damage checkpoint
GO:0008630 IDA intrinsic apoptotic signaling pathway in response to DNA damage
GO:0016021 IEA integral component of membrane
GO:0043066 IEA negative regulation of apoptotic process
GO:0045732 IDA positive regulation of protein catabolic process
GO:0045820 IMP negative regulation of glycolytic process
GO:0046822 IMP regulation of nucleocytoplasmic transport
GO:0050728 IMP negative regulation of inflammatory response
GO:1901029 IDA negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway
GO:2000377 IDA regulation of reactive oxygen species metabolic process
GO:2001020 IMP regulation of response to DNA damage stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259874 IER3-001 protein_coding Homo_sapiens 0 283
ENST00000383560 IER3-001 protein_coding Homo_sapiens 0 289
ENST00000416884 IER3-001 protein_coding Homo_sapiens 0 289
ENST00000435856 IER3-001 protein_coding Homo_sapiens 0 289
ENST00000439190 IER3-001 protein_coding Homo_sapiens 0 289
ENST00000450236 IER3-001 protein_coding Homo_sapiens 0 289

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