C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alcohol dehydrogenase 5 (class III), chi polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005964 Adh5-001 ENSMUSG00000028138 10090 + 3:138443093-138455499 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005964
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005964 33.812±0.64 35.474±2.08 41.248±4.55 27.305±5.46 18.805±1.18 17.639±1.69 23.713±0.57 56.726±2.86 93.027±39.25 17.740±1.51 27.531±1.39 37.808±16.63 38.822±14.65 10.502±2.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LO CIL_0008LO_0002 VISTA 3:138442669-139045155

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 IMP retinoid metabolic process
GO:0003016 IMP respiratory system process
GO:0004022 IDA alcohol dehydrogenase (NAD) activity
GO:0005504 IEA fatty acid binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006068 IEA ethanol catabolic process
GO:0006069 IEA ethanol oxidation
GO:0007568 IEA aging
GO:0008270 IEA zinc ion binding
GO:0018119 IMP peptidyl-cysteine S-nitrosylation
GO:0018467 IEA formaldehyde dehydrogenase activity
GO:0032496 IMP response to lipopolysaccharide
GO:0042803 IPI protein homodimerization activity
GO:0045777 IMP positive regulation of blood pressure
GO:0046294 IMP formaldehyde catabolic process
GO:0051409 IMP response to nitrosative stress
GO:0051775 IEA response to redox state
GO:0051903 IMP S-(hydroxymethyl)glutathione dehydrogenase activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296412 ADH5-001 protein_coding Homo_sapiens 0 1378
ENST00000414059 RP4-800M22.1-001 processed_pseudogene Homo_sapiens 0 346
ENST00000425922 ADH5P2-001 processed_pseudogene Homo_sapiens 0 1096
ENST00000433151 ADH5P4-001 processed_pseudogene Homo_sapiens 0 1271
ENST00000433842 ADH5P3-001 processed_pseudogene Homo_sapiens 0 1175
ENST00000444694 AC216138.1-201 processed_pseudogene Homo_sapiens 0 1290
ENST00000502386 ADH5-006 nonsense_mediated_decay Homo_sapiens 0 337
ENST00000502590 ADH5-009 nonsense_mediated_decay Homo_sapiens 0 346
ENST00000503130 ADH5-011 protein_coding Homo_sapiens 0 309
ENST00000505652 ADH5-005 nonsense_mediated_decay Homo_sapiens 0 477
ENST00000507102 ADH5-008 retained_intron Homo_sapiens 0 346
ENST00000507986 CTD-2138O14.1-001 transcribed_processed_pseudogene Homo_sapiens 0 372
ENST00000508146 ADH5-004 processed_transcript Homo_sapiens 0 477
ENST00000508511 ADH5-002 retained_intron Homo_sapiens 0 1027
ENST00000512621 ADH5-003 retained_intron Homo_sapiens 0 1319
ENST00000512659 ADH5-013 nonsense_mediated_decay Homo_sapiens 2e-33 147
ENST00000512991 ADH5-007 processed_transcript Homo_sapiens 0 870

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