C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008LO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2086 VISTA 9606 4:98355609-98958137
GeneTranscriptPositionBiotype
ENSG00000151247 (EIF4E)
eukaryotic translation initiation factor 4E 		ENST00000280892 (EIF4E-002) 98880765-98929092 protein_coding
ENST00000418385 (EIF4E-004) 98925972-98929125 processed_transcript
ENST00000450253 (EIF4E-001) 98871684-98930637 protein_coding
ENST00000504432 (EIF4E-005) 98880845-98929125 protein_coding
ENST00000504472 (EIF4E-006) 98895122-98929133 processed_transcript
ENST00000505194 (EIF4E-010) 98881010-98890898 processed_transcript
ENST00000505829 (EIF4E-009) 98887163-98891571 retained_intron
ENST00000505992 (EIF4E-007) 98880898-98929133 protein_coding
ENST00000507665 (EIF4E-003) 98886351-98929128 retained_intron
ENST00000511644 (EIF4E-008) 98880845-98929101 protein_coding
ENST00000515638 (EIF4E-011) 98880772-98929125 nonsense_mediated_decay
ENSG00000168785 (TSPAN5)
tetraspanin 5 		ENST00000305798 (TSPAN5-001) 98470367-98658629 protein_coding
ENST00000505184 (TSPAN5-004) 98472210-98657692 protein_coding
ENST00000507167 (TSPAN5-010) 98486545-98658294 retained_intron
ENST00000508798 (TSPAN5-002) 98470367-98658570 nonsense_mediated_decay
ENST00000509168 (TSPAN5-007) 98478700-98560233 processed_transcript
ENST00000511651 (TSPAN5-005) 98482062-98657649 protein_coding
ENST00000511753 (TSPAN5-003) 98472345-98485532 retained_intron
ENST00000511800 (TSPAN5-008) 98482101-98657647 nonsense_mediated_decay
ENST00000515287 (TSPAN5-006) 98478717-98657635 protein_coding
ENST00000515440 (TSPAN5-009) 98478685-98658198 nonsense_mediated_decay
ENSG00000214886 (FAM177A1P1)
family with sequence similarity 177, member A1 pseudogene 1 		ENST00000503598 (FAM177A1P1-001) 98955982-98956767 processed_pseudogene
ENSG00000227118 (BTF3P13)
basic transcription factor 3 pseudogene 13 		ENST00000513224 (BTF3P13-001) 98740742-98741231 processed_pseudogene
ENSG00000242318 (RP11-810D13.1)
 ENST00000485315 (RP11-810D13.1-001) 98409290-98409763 processed_pseudogene
ENSG00000249764 (RP11-1299A16.1)
 ENST00000507207 (RP11-1299A16.1-001) 98713804-98713971 processed_pseudogene
ENSG00000251523 (RP11-724M22.1)
 ENST00000505408 (RP11-724M22.1-001) 98496364-98509935 antisense
ENSG00000260641 (RP11-1299A16.3)
 ENST00000569927 (RP11-1299A16.3-001) 98658904-98664550 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0008LO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2086 VISTA 10090 3:138442669-139045155
GeneTranscriptPositionBiotype
ENSMUSG00000005813 (Metap1)
methionyl aminopeptidase 1 		ENSMUST00000029804 (Metap1-201) 138458960-138489382 protein_coding
ENSMUSG00000028138 (Adh5)
alcohol dehydrogenase 5 (class III), chi polypeptide 		ENSMUST00000005964 (Adh5-001) 138443093-138455499 protein_coding
ENSMUST00000159392 (Adh5-005) 138454405-138455243 retained_intron
ENSMUST00000160201 (Adh5-002) 138443170-138447939 processed_transcript
ENSMUST00000160625 (Adh5-004) 138443170-138445403 retained_intron
ENSMUST00000162024 (Adh5-003) 138443111-138445948 retained_intron
ENSMUSG00000028149 (Rap1gds1)
RAP1, GTP-GDP dissociation stimulator 1 		ENSMUST00000029796 (Rap1gds1-201) 138925906-139075199 protein_coding
ENSMUST00000098574 (Rap1gds1-202) 138925906-139075199 protein_coding
ENSMUSG00000028152 (Tspan5)
tetraspanin 5 		ENSMUST00000029800 (Tspan5-001) 138742195-138904433 protein_coding
ENSMUST00000119993 (Tspan5-003) 138809874-138903674 protein_coding
ENSMUST00000121826 (Tspan5-004) 138860493-138902657 protein_coding
ENSMUST00000127772 (Tspan5-008) 138742505-138896861 nonsense_mediated_decay
ENSMUST00000135629 (Tspan5-006) 138778207-138894518 protein_coding
ENSMUST00000142001 (Tspan5-007) 138778206-138902494 nonsense_mediated_decay
ENSMUST00000142890 (Tspan5-002) 138742305-138904426 nonsense_mediated_decay
ENSMUST00000146356 (Tspan5-009) 138782854-138896871 protein_coding
ENSMUST00000153336 (Tspan5-005) 138742769-138894484 protein_coding
ENSMUSG00000028156 (Eif4e)
eukaryotic translation initiation factor 4E 		ENSMUST00000029803 (Eif4e-201) 138526191-138557599 protein_coding
ENSMUSG00000086123 (Gm16060)
predicted pseudogene 16060 		ENSMUST00000153140 (Gm16060-001) 138828685-138829162 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008LO_0001ENSG00000151247ENST00000280892ENST00000450253ENST00000505194ENST00000505992ENST00000511644ENST00000515638ENSG00000168785ENST00000305798ENST00000505184ENST00000508798ENST00000509168ENST00000511753ENST00000515287ENSG00000214886ENST00000503598ENSG00000227118ENST00000513224ENSG00000242318ENST00000485315ENSG00000249764ENST00000507207ENSG00000251523ENST00000505408ENSG00000260641ENST00000569927CIL_0008LO_0002ENSMUSG00000005813ENSMUST00000029804ENSMUSG00000028138ENSMUST00000005964ENSMUSG00000028149ENSMUST00000029796ENSMUST00000098574ENSMUSG00000028152ENSMUST00000029800ENSMUST00000119993ENSMUST00000121826ENSMUST00000142890ENSMUST00000146356ENSMUSG00000028156ENSMUST00000029803ENSMUSG00000086123ENSMUST00000153140
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000151247 ENST00000280892 N/A N/A N/A 14.183±0.00 N/A 5.003±0.00 5.072±0.00 8.243±0.00 6.648±0.00 N/A 2.582±0.00 21.430±7.03 10.407±5.95 17.904±0.00
ENST00000418385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450253 2.084±0.00 N/A 0.311±0.00 2.982±0.00 1.000±0.00 1.136±0.00 0.719±0.00 1.184±0.00 1.272±0.00 1.255±0.00 0.231±0.00 1.637±0.65 1.311±0.21 3.128±0.50
ENST00000504432 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.391±0.00 N/A 5.237±0.00 N/A
ENST00000505829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505992 N/A N/A 14.679±0.00 52.474±0.00 19.620±0.00 25.642±0.00 15.581±0.00 16.056±0.00 23.365±0.00 22.751±0.00 6.737±0.00 30.565±17.10 8.742±0.00 17.335±0.00
ENST00000507665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511644 N/A N/A N/A N/A 10.590±0.00 7.823±0.00 5.737±0.00 N/A N/A 17.522±0.00 4.171±0.00 N/A 5.132±0.00 N/A
ENST00000515638 13.471±0.00 N/A 2.997±0.00 N/A 8.994±0.80 8.734±0.29 N/A 13.731±0.00 6.879±0.00 N/A N/A N/A N/A N/A
ENSG00000168785 ENST00000305798 N/A 3.138±0.00 N/A 15.092±4.75 0.546±0.00 0.900±0.43 0.293±0.00 0.975±0.61 0.632±0.00 1.404±1.11 N/A 8.047±7.31 2.730±1.23 5.179±0.00
ENST00000505184 N/A N/A N/A 11.890±0.00 0.986±0.00 N/A 1.065±0.00 N/A N/A 1.411±0.00 N/A 3.350±0.00 N/A N/A
ENST00000507167 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508798 0.227±0.00 1.495±0.00 N/A 9.370±0.00 N/A 0.645±0.00 0.447±0.00 0.799±0.00 0.135±0.00 N/A 0.223±0.00 2.950±0.00 2.019±0.37 2.409±0.00
ENST00000509168 N/A N/A 5.417±0.00 40.873±0.00 N/A N/A N/A N/A 2.798±0.00 1.434±0.00 N/A N/A N/A N/A
ENST00000511651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511753 N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000511800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515287 N/A N/A 3.441±0.00 N/A N/A N/A N/A 1.043±0.00 N/A N/A 0.511±0.00 N/A N/A 10.176±0.00
ENST00000515440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214886 ENST00000503598 1.411±0.00 0.827±0.00 N/A 2.641±0.00 0.870±0.00 1.482±0.00 1.678±0.00 2.369±0.00 0.860±0.00 1.852±0.00 0.351±0.00 0.095±0.00 N/A 1.145±0.00
ENSG00000227118 ENST00000513224 0.107±0.00 0.084±0.00 N/A 0.057±0.00 0.193±0.00 0.233±0.00 N/A 0.083±0.00 0.050±0.00 0.026±0.00 0.099±0.00 N/A N/A 0.149±0.00
ENSG00000242318 ENST00000485315 N/A 0.176±0.00 N/A 0.276±0.25 0.582±0.00 0.088±0.00 0.111±0.00 0.659±0.61 0.663±0.00 N/A N/A 0.038±0.00 0.080±0.00 0.117±0.00
ENSG00000249764 ENST00000507207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.883±0.00
ENSG00000251523 ENST00000505408 0.183±0.00 0.195±0.00 N/A 0.137±0.07 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.047±0.00
ENSG00000260641 ENST00000569927 N/A 0.229±0.00 N/A 0.585±0.16 0.007±0.00 0.032±0.01 0.012±0.01 0.064±0.00 0.005±0.00 N/A 0.003±0.00 0.118±0.03 0.012±0.00 0.090±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005813 ENSMUST00000029804 9.658±0.91 5.232±1.13 19.497±2.42 15.762±2.20 9.857±2.59 9.143±1.93 11.682±0.78 12.204±0.85 14.581±6.26 8.553±1.45 22.250±1.18 10.504±4.25 33.021±7.46 8.949±3.60
ENSMUSG00000028138 ENSMUST00000005964 33.812±0.64 35.474±2.08 41.248±4.55 27.305±5.46 18.805±1.18 17.639±1.69 23.713±0.57 56.726±2.86 93.027±39.25 17.740±1.51 27.531±1.39 37.808±16.63 38.822±14.65 10.502±2.60
ENSMUST00000159392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028149 ENSMUST00000029796 7.119±2.04 8.702±1.52 4.864±1.05 29.936±31.43 5.442±0.96 4.045±1.00 2.711±0.99 4.386±1.23 1.303±0.42 3.640±1.04 9.924±1.88 5.595±3.41 4.509±3.36 0.908±0.25
ENSMUST00000098574 8.097±2.68 5.351±1.27 5.309±0.68 8.201±2.25 7.884±1.25 6.289±1.68 3.881±0.76 8.610±1.25 3.845±0.93 7.140±1.67 3.016±0.80 6.095±2.71 6.230±1.83 0.628±0.11
ENSMUSG00000028152 ENSMUST00000029800 10.056±4.36 43.033±15.54 22.453±0.54 27.373±1.01 11.598±3.12 7.917±0.85 1.498±0.20 8.500±1.94 0.961±0.55 14.988±0.40 0.556±0.19 21.287±6.54 1.246±0.37 2.878±1.11
ENSMUST00000119993 N/A N/A N/A 9.509±0.00 N/A N/A N/A N/A N/A N/A N/A 2.786±0.57 0.556±0.23 0.311±0.00
ENSMUST00000121826 N/A N/A N/A N/A N/A N/A N/A N/A 0.326±0.00 N/A N/A N/A N/A 4.534±1.62
ENSMUST00000127772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142890 1.713±0.14 15.429±5.09 6.174±0.00 7.394±2.67 1.843±0.05 1.143±0.00 0.538±0.05 2.891±0.39 0.283±0.11 3.113±1.04 0.478±0.09 2.718±0.52 0.430±0.09 1.799±0.89
ENSMUST00000146356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.131±0.00 N/A
ENSMUST00000153336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028156 ENSMUST00000029803 6.828±1.61 8.343±1.79 18.266±7.11 36.679±11.89 6.468±2.37 4.505±2.28 13.538±1.03 7.619±1.61 19.405±14.98 7.195±2.46 12.887±7.71 14.475±5.23 23.457±13.74 22.491±14.63
ENSMUSG00000086123 ENSMUST00000153140 0.376±0.00 0.618±0.24 0.194±0.00 N/A 0.351±0.09 0.278±0.00 N/A 0.267±0.12 0.075±0.02 0.418±0.13 0.146±0.00 0.345±0.06 0.130±0.14 0.158±0.04

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