C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetratricopeptide repeat domain 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000006451 Ttc5-201 ENSMUSG00000006288 10090 - 14:50765415-50785518 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006451
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006451 8.308±1.23 7.999±0.80 17.845±3.59 25.995±6.02 8.017±2.17 9.059±2.20 3.981±0.65 9.520±1.49 7.008±3.13 8.394±2.96 2.117±0.46 16.507±3.70 12.342±2.97 5.184±1.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Q8 CIL_0005Q8_0002 CGP 14:50736219-50785518
CIL_0001OC CIL_0001OC_0002 CGP 14:50765415-50795728

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006281 IEA DNA repair
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258821 TTC5-001 protein_coding Homo_sapiens 0 1478
ENST00000383029 TTC5-002 nonsense_mediated_decay Homo_sapiens 0 1038
ENST00000554157 TTC5-004 retained_intron Homo_sapiens 0 1219
ENST00000557379 TTC5-006 retained_intron Homo_sapiens 0 444

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