C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras homolog gene family, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000007959 Rhoa-201 ENSMUSG00000007815 10090 + 9:108306205-108337939 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000007959
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000007959 117.003±6.79 169.062±23.96 134.926±9.92 35.322±15.16 94.816±23.51 77.044±2.75 56.868±6.53 90.616±6.21 61.253±18.51 152.026±4.38 26.225±4.46 83.537±24.17 82.891±45.75 16.283±5.93

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IGI cell morphogenesis
GO:0001666 IEA response to hypoxia
GO:0003924 IDA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005829 IDA cytosol
GO:0005856 IEA cytoskeleton
GO:0005886 IDA plasma membrane
GO:0005938 ISS cell cortex
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0007010 IMP cytoskeleton organization
GO:0007155 IMP cell adhesion
GO:0007160 IDA cell-matrix adhesion
GO:0007229 TAS integrin-mediated signaling pathway
GO:0007266 TAS Rho protein signal transduction
GO:0007519 IDA skeletal muscle tissue development
GO:0008064 IEA regulation of actin polymerization or depolymerization
GO:0009612 IEA response to mechanical stimulus
GO:0009749 IEA response to glucose
GO:0019003 IEA GDP binding
GO:0019904 IEA protein domain specific binding
GO:0021795 IMP cerebral cortex cell migration
GO:0021861 IMP forebrain radial glial cell differentiation
GO:0030027 IDA lamellipodium
GO:0030036 IDA actin cytoskeleton organization
GO:0030154 IDA cell differentiation
GO:0030307 IEA positive regulation of cell growth
GO:0030334 ISS regulation of cell migration
GO:0030335 IEA positive regulation of cell migration
GO:0030424 IEA axon
GO:0030521 IDA androgen receptor signaling pathway
GO:0030838 IEA positive regulation of actin filament polymerization
GO:0031098 IEA stress-activated protein kinase signaling cascade
GO:0032467 ISS positive regulation of cytokinesis
GO:0032587 IDA ruffle membrane
GO:0033144 IDA negative regulation of intracellular steroid hormone receptor signaling pathway
GO:0033688 IMP regulation of osteoblast proliferation
GO:0036089 ISS cleavage furrow formation
GO:0042493 IEA response to drug
GO:0043123 ISS positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043124 IEA negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043149 IDA stress fiber assembly
GO:0043200 IEA response to amino acid
GO:0043280 IEA positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043297 IDA apical junction assembly
GO:0043524 IMP negative regulation of neuron apoptotic process
GO:0043525 IEA positive regulation of neuron apoptotic process
GO:0043931 IMP ossification involved in bone maturation
GO:0045471 IEA response to ethanol
GO:0045665 IEA negative regulation of neuron differentiation
GO:0045666 ISO positive regulation of neuron differentiation
GO:0045727 IEA positive regulation of translation
GO:0045785 IEA positive regulation of cell adhesion
GO:0045907 IEA positive regulation of vasoconstriction
GO:0045987 IEA positive regulation of smooth muscle contraction
GO:0048812 IEA neuron projection morphogenesis
GO:0050773 IEA regulation of dendrite development
GO:0051384 IEA response to glucocorticoid
GO:0051496 ISO positive regulation of stress fiber assembly
GO:0051924 IEA regulation of calcium ion transport
GO:0060548 IEA negative regulation of cell death
GO:0061383 IMP trabecula morphogenesis
GO:0071803 IGI positive regulation of podosome assembly
GO:2000177 IMP regulation of neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000406314 RP11-40G16.1-001 processed_pseudogene Homo_sapiens 0 510
ENST00000418115 RHOA-001 protein_coding Homo_sapiens 0 1746
ENST00000422781 RHOA-003 protein_coding Homo_sapiens 0 597
ENST00000431929 RHOA-006 protein_coding Homo_sapiens 0 244
ENST00000445425 RHOA-005 protein_coding Homo_sapiens 0 566
ENST00000454011 RHOA-004 protein_coding Homo_sapiens 0 917

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