C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras homolog family member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000418115 RHOA-001 ENSG00000067560 9606 - 3:49359145-49412202 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000418115
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000418115 271.144±0.00 280.791±0.00 21.990±0.00 83.260±43.23 186.972±128.93 121.313±67.32 62.720±45.99 131.380±100.47 75.980±14.08 188.773±121.07 136.809±107.70 161.918±82.13 318.603±49.17 165.425±51.25

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 TAS:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0005886 TAS plasma membrane
GO:0005925 IDA focal adhesion
GO:0005938 IDA cell cortex
GO:0006184 IEA GTP catabolic process
GO:0007165 IEA signal transduction
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0007264 IEA:TAS small GTPase mediated signal transduction
GO:0007266 TAS Rho protein signal transduction
GO:0007411 TAS axon guidance
GO:0007596 TAS blood coagulation
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016032 IEA viral process
GO:0017022 IPI myosin binding
GO:0021762 IEP substantia nigra development
GO:0030027 ISS lamellipodium
GO:0030036 TAS actin cytoskeleton organization
GO:0030054 TAS cell junction
GO:0030168 TAS platelet activation
GO:0030334 IMP regulation of cell migration
GO:0032467 IMP positive regulation of cytokinesis
GO:0033688 ISS regulation of osteoblast proliferation
GO:0036089 IDA cleavage furrow formation
GO:0038027 IMP apolipoprotein A-I-mediated signaling pathway
GO:0042346 NAS positive regulation of NF-kappaB import into nucleus
GO:0043123 IEP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043296 IDA apical junction complex
GO:0043297 IMP apical junction assembly
GO:0043931 ISS ossification involved in bone maturation
GO:0045666 IMP positive regulation of neuron differentiation
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0048015 TAS phosphatidylinositol-mediated signaling
GO:0050770 TAS regulation of axonogenesis
GO:0050771 TAS negative regulation of axonogenesis
GO:0050772 TAS positive regulation of axonogenesis
GO:0050919 IMP negative chemotaxis
GO:0051056 TAS regulation of small GTPase mediated signal transduction
GO:0051496 IDA positive regulation of stress fiber assembly
GO:0061383 ISS trabecula morphogenesis
GO:0070062 IDA extracellular vesicular exosome
GO:0090307 IMP spindle assembly involved in mitosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000007959 Rhoa-201 protein_coding Mus_musculus 0 1746
ENSMUST00000119463 Gm12844-001 processed_pseudogene Mus_musculus 0 870
ENSMUST00000120849 Gm13578-001 processed_pseudogene Mus_musculus 0 804
ENSMUST00000043382 4930544G11Rik-201 protein_coding Mus_musculus 0 675
ENSMUST00000187552 RP24-525E22.3-001 processed_pseudogene Mus_musculus 0 612
ENSMUST00000186362 Rhoay-ps2-001 processed_pseudogene Mus_musculus 0 612
ENSMUST00000186637 RP24-1D8.4-001 processed_pseudogene Mus_musculus 0 612
ENSMUST00000187648 Rhoay-ps3-001 processed_pseudogene Mus_musculus 0 610
ENSMUST00000191243 RP24-165F4.1-001 processed_pseudogene Mus_musculus 0 601

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