C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ELK1, member of ETS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000009550 Elk1-001 ENSMUSG00000009406 10090 - X:20933395-20950608 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000009550
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000009550 11.216±1.74 25.060±1.74 6.870±0.51 8.232±2.33 11.990±4.50 7.391±0.72 5.119±0.85 5.338±1.79 2.665±0.29 7.941±2.30 3.375±0.20 16.148±6.31 2.931±1.33 0.865±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000577 CIL_000577_0002 CGP X:20925454-20950608
CIL_000578 CIL_000578_0002 CGP X:20933395-20962017

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001047 IEA core promoter binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003682 IEA chromatin binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IBA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0009416 IEA response to light stimulus
GO:0030154 IBA cell differentiation
GO:0030425 IEA dendrite
GO:0043025 IEA neuronal cell body
GO:0043679 IEA axon terminus
GO:0045893 ISA positive regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0071394 IEA cellular response to testosterone stimulus
GO:0071396 IEA cellular response to lipid
GO:0071480 IEA cellular response to gamma radiation
GO:1901216 IEA positive regulation of neuron death

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000247161 ELK1-001 protein_coding Homo_sapiens 0 2420
ENST00000343894 ELK1-201 protein_coding Homo_sapiens 0 1303
ENST00000376983 ELK1-002 protein_coding Homo_sapiens 0 1690
ENST00000415014 ELK2BP-001 unprocessed_pseudogene Homo_sapiens 0 398
ENST00000480157 ELK1-003 processed_transcript Homo_sapiens 0 446
ENST00000592066 ELK1-005 protein_coding Homo_sapiens 0 1735
ENST00000619324 ELK1-202 protein_coding Homo_sapiens 0 2521

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