C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD52 motif 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000010506 Rdm1-001 ENSMUSG00000010362 10090 + 11:101627942-101636100 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000010506
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000010506 12.825±0.28 12.268±1.32 16.059±1.47 6.685±3.29 15.692±3.83 11.238±2.14 19.084±1.96 21.203±1.91 5.077±1.31 12.117±2.36 15.544±1.20 11.411±2.50 7.369±2.72 4.071±1.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000996 CIL_000996_0002 VISTA 11:101501412-102102123
CIL_00090X CIL_00090X_0002 VISTA 11:101529827-102131014
CIL_000997 CIL_000997_0002 VISTA 11:101567301-102168287

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000611538 RDM1-201 protein_coding Homo_sapiens 0 322
ENST00000612980 RDM1-011 protein_coding Homo_sapiens 0 322
ENST00000613308 RDM1-004 protein_coding Homo_sapiens 0 368
ENST00000613554 RDM1-202 protein_coding Homo_sapiens 0 283
ENST00000615024 RDM1-014 nonsense_mediated_decay Homo_sapiens 0 283
ENST00000615288 RDM1-010 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000615378 RDM1-003 protein_coding Homo_sapiens 0 283
ENST00000616596 RDM1-002 protein_coding Homo_sapiens 0 337
ENST00000616735 RDM1-203 protein_coding Homo_sapiens 0 337
ENST00000617591 RDM1-015 protein_coding Homo_sapiens 0 283
ENST00000618461 RDM1-204 protein_coding Homo_sapiens 0 438
ENST00000618511 RDM1-012 nonsense_mediated_decay Homo_sapiens 0 283
ENST00000619193 RDM1-008 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000619262 RDM1-005 protein_coding Homo_sapiens 0 399
ENST00000619828 RDM1-013 protein_coding Homo_sapiens 0 298
ENST00000619876 RDM1-007 protein_coding Homo_sapiens 0 329
ENST00000620284 RDM1-001 protein_coding Homo_sapiens 0 438

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