C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fatty acid desaturase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000010807 Fads1-201 ENSMUSG00000010663 10090 + 19:10182888-10196870 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000010807
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000010807 17.015±4.62 164.825±32.59 37.240±3.70 40.222±13.53 14.834±1.95 7.339±0.86 4.151±0.61 24.427±1.31 72.223±40.09 32.895±0.37 1.255±0.64 39.388±6.31 10.751±4.12 11.362±3.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MK CIL_0002MK_0002 CGP 19:10064164-10196870
CIL_0007WT CIL_0007WT_0002 VISTA 19:10121785-10724671

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005634 IEA nucleus
GO:0005739 IEA mitochondrion
GO:0005783 IEA endoplasmic reticulum
GO:0006636 IEA unsaturated fatty acid biosynthetic process
GO:0007568 IEA aging
GO:0007584 IEA response to nutrient
GO:0009267 IEA cellular response to starvation
GO:0009744 IEA response to sucrose
GO:0010033 IEA response to organic substance
GO:0014070 IEA response to organic cyclic compound
GO:0016021 IEA integral component of membrane
GO:0016491 IEA oxidoreductase activity
GO:0019369 IEA arachidonic acid metabolic process
GO:0020037 IEA heme binding
GO:0032868 IEA response to insulin
GO:0033189 IEA response to vitamin A
GO:0035900 IEA response to isolation stress
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000350997 FADS1-001 protein_coding Homo_sapiens 0 1458
ENST00000421879 FADS1-005 protein_coding Homo_sapiens 0 582
ENST00000424501 FADS1-008 nonsense_mediated_decay Homo_sapiens 0 549
ENST00000433932 FADS1-002 protein_coding Homo_sapiens 0 1280
ENST00000460649 FADS1-004 protein_coding Homo_sapiens 0 488
ENST00000491310 FADS1-007 protein_coding Homo_sapiens 0 351
ENST00000496123 FADS1-021 processed_transcript Homo_sapiens 0 468
ENST00000517839 FADS2-011 protein_coding Homo_sapiens 1e-39 167
ENST00000522056 FADS2-002 protein_coding Homo_sapiens 1e-38 165
ENST00000536991 FADS1-022 protein_coding Homo_sapiens 0 582
ENST00000539999 FADS1-013 protein_coding Homo_sapiens 0 472
ENST00000540767 FADS1-016 protein_coding Homo_sapiens 0 662
ENST00000541683 FADS1-015 processed_transcript Homo_sapiens 0.000000000007 77
ENST00000542506 FADS1-012 protein_coding Homo_sapiens 0 1280
ENST00000545245 FADS1-019 protein_coding Homo_sapiens 0 660
ENST00000545405 FADS1-018 protein_coding Homo_sapiens 0 627

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