C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SURP and G patch domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000011450 Sugp1-201 ENSMUSG00000011306 10090 + 8:70042813-70071953 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000011450
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000011450 4.365±0.18 3.985±1.48 8.032±0.74 19.973±6.40 2.658±1.61 5.109±0.86 3.077±0.36 3.935±0.85 3.220±1.38 4.348±0.34 5.513±1.21 7.572±5.25 12.340±4.13 22.786±6.99

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000247001 SUGP1-001 protein_coding Homo_sapiens 0 2091
ENST00000535070 SUGP1-012 nonsense_mediated_decay Homo_sapiens 0 497
ENST00000585444 SUGP1-008 nonsense_mediated_decay Homo_sapiens 0 244
ENST00000585763 SUGP1-013 processed_transcript Homo_sapiens 0 497
ENST00000586387 SUGP1-014 retained_intron Homo_sapiens 0 374
ENST00000587119 SUGP1-002 nonsense_mediated_decay Homo_sapiens 0 1565
ENST00000587716 SUGP1-016 processed_transcript Homo_sapiens 0 364
ENST00000588580 SUGP1-011 retained_intron Homo_sapiens 0 425
ENST00000588731 SUGP1-003 nonsense_mediated_decay Homo_sapiens 0 1565
ENST00000589144 SUGP1-004 nonsense_mediated_decay Homo_sapiens 0 1293
ENST00000590439 SUGP1-010 protein_coding Homo_sapiens 0 721
ENST00000591007 SUGP1-005 retained_intron Homo_sapiens 0 1293
ENST00000591350 SUGP1-007 nonsense_mediated_decay Homo_sapiens 0 527
ENST00000592188 SUGP1-006 retained_intron Homo_sapiens 0 905
ENST00000606725 SUGP1-015 processed_transcript Homo_sapiens 0 475

Loading