C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scavenger receptor class F, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000012161 Scarf2-201 ENSMUSG00000012017 10090 + 16:17797282-17808287 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000012161
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000012161 27.712±18.94 16.167±3.27 20.181±1.37 2.995±0.12 14.689±7.16 16.179±0.65 3.398±0.60 11.934±2.39 2.600±1.25 76.510±11.58 0.697±0.35 42.479±18.35 6.629±3.52 0.581±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086B CIL_00086B_0002 VISTA 16:17508169-18111091

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005044 IDA scavenger receptor activity
GO:0005925 IEA focal adhesion
GO:0006898 IDA receptor-mediated endocytosis
GO:0007157 IDA heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000615031 SCARF2-201 protein_coding Homo_sapiens 0 2211
ENST00000622235 SCARF2-002 protein_coding Homo_sapiens 0 2202
ENST00000623402 SCARF2-005 protein_coding Homo_sapiens 0 2152

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