C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 39 (zinc transporter), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000015467 Slc39a1-001 ENSMUSG00000052310 10090 + 3:90248172-90253612 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000015467
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000015467 48.844±0.59 47.896±3.31 29.408±3.23 7.409±4.20 47.300±3.29 54.395±5.42 22.642±0.28 29.935±1.79 20.251±9.39 39.109±1.82 13.671±0.65 62.977±14.20 44.020±10.08 9.553±4.41

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 IEA receptor binding
GO:0005385 IDA zinc ion transmembrane transporter activity
GO:0005886 ISS plasma membrane
GO:0006829 IDA zinc ion transport
GO:0016021 IEA integral component of membrane
GO:0071577 IDA zinc ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310483 SLC39A1-003 protein_coding Homo_sapiens 0 1262
ENST00000356205 SLC39A1-001 protein_coding Homo_sapiens 0 1327
ENST00000368621 SLC39A1-004 protein_coding Homo_sapiens 0 1264
ENST00000368623 SLC39A1-002 protein_coding Homo_sapiens 0 1264
ENST00000413622 SLC39A1-005 protein_coding Homo_sapiens 0 741
ENST00000417348 SLC39A1-008 protein_coding Homo_sapiens 0 632
ENST00000426397 RP4-539M6.18-001 processed_pseudogene Homo_sapiens 0 388
ENST00000429040 SLC39A1-006 protein_coding Homo_sapiens 0 1096
ENST00000537590 SLC39A1-201 protein_coding Homo_sapiens 0 922
ENST00000617697 SLC39A1-202 protein_coding Homo_sapiens 0 1262
ENST00000621013 SLC39A1-203 protein_coding Homo_sapiens 0 1264

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