C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: farnesyltransferase, CAAX box, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000016138 Fnta-201 ENSMUSG00000015994 10090 - 8:25998729-26015601 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016138
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016138 15.203±2.56 6.008±0.88 21.062±1.38 13.151±1.74 10.815±6.12 5.855±1.06 13.925±0.55 12.460±2.05 10.033±3.75 11.227±1.19 25.553±2.17 13.878±9.22 28.665±7.30 20.796±2.92

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004660 IDA protein farnesyltransferase activity
GO:0004661 ISS protein geranylgeranyltransferase activity
GO:0004662 IEA CAAX-protein geranylgeranyltransferase activity
GO:0004663 IDA Rab geranylgeranyltransferase activity
GO:0005515 IEA protein binding
GO:0005875 IEA microtubule associated complex
GO:0005953 ISS CAAX-protein geranylgeranyltransferase complex
GO:0005965 ISS protein farnesyltransferase complex
GO:0008017 IEA microtubule binding
GO:0010469 IMP regulation of receptor activity
GO:0018343 ISS protein farnesylation
GO:0018344 ISS protein geranylgeranylation
GO:0030548 IMP acetylcholine receptor regulator activity
GO:0030971 IPI receptor tyrosine kinase binding
GO:0043014 IEA alpha-tubulin binding
GO:0045213 IMP neurotransmitter receptor metabolic process
GO:0090044 IEA positive regulation of tubulin deacetylation
GO:0090045 IEA positive regulation of deacetylase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302279 FNTA-001 protein_coding Homo_sapiens 0 1397
ENST00000430308 FNTAP2-001 processed_pseudogene Homo_sapiens 0 383
ENST00000524546 FNTA-011 processed_transcript Homo_sapiens 0 588
ENST00000525099 FNTA-003 retained_intron Homo_sapiens 0 433
ENST00000525699 FNTA-009 protein_coding Homo_sapiens 0 459
ENST00000526755 FNTA-002 nonsense_mediated_decay Homo_sapiens 0 643
ENST00000527153 FNTA-010 processed_transcript Homo_sapiens 0 632
ENST00000528400 FNTA-012 retained_intron Homo_sapiens 0 351
ENST00000529687 FNTA-004 protein_coding Homo_sapiens 0 1142
ENST00000530657 FNTAL1-001 processed_pseudogene Homo_sapiens 0 1173
ENST00000531266 FNTA-008 protein_coding Homo_sapiens 0 568
ENST00000533336 FNTA-007 protein_coding Homo_sapiens 0 894
ENST00000533368 FNTA-013 retained_intron Homo_sapiens 0 494
ENST00000533383 FNTA-005 nonsense_mediated_decay Homo_sapiens 0 970
ENST00000533559 FNTA-014 processed_transcript Homo_sapiens 0 283
ENST00000533998 FNTA-006 nonsense_mediated_decay Homo_sapiens 0 230
ENST00000534420 RP11-598P20.5-001 nonsense_mediated_decay Homo_sapiens 0 723

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