C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: exosome component 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000017408 Exosc10-001 ENSMUSG00000017264 10090 + 4:148558429-148582401 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000017408
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000017408 1.109±0.00 8.988±1.02 7.750±2.88 1.228±0.01 2.265±0.44 2.882±1.07 6.546±1.68 5.335±0.85 15.752±1.41 19.796±14.83 10.530±1.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JY CIL_0008JY_0002 VISTA 4:148408124-149009196
CIL_0008JG CIL_0008JG_0002 VISTA 4:148444314-149044861
CIL_0008RU CIL_0008RU_0002 VISTA 4:148508781-149109416
CIL_0008S2 CIL_0008S2_0002 VISTA 4:148555953-149160332

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000176 IEA nuclear exosome (RNase complex)
GO:0000178 ISS exosome (RNase complex)
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000460 IEA maturation of 5.8S rRNA
GO:0000956 IEA nuclear-transcribed mRNA catabolic process
GO:0004532 IEA exoribonuclease activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 ISS nucleolus
GO:0005737 ISS cytoplasm
GO:0008408 IEA 3'-5' exonuclease activity
GO:0009048 IMP dosage compensation by inactivation of X chromosome
GO:0016020 IEA membrane
GO:0035327 IEA transcriptionally active chromatin
GO:0044822 IEA poly(A) RNA binding
GO:0071028 IEA nuclear mRNA surveillance
GO:0071034 IEA CUT catabolic process
GO:0071035 IEA nuclear polyadenylation-dependent rRNA catabolic process
GO:0071044 ISS histone mRNA catabolic process
GO:0071048 IEA nuclear retention of unspliced pre-mRNA at the site of transcription
GO:0090503 IEA RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000304457 EXOSC10-002 protein_coding Homo_sapiens 0 2036
ENST00000376936 EXOSC10-001 protein_coding Homo_sapiens 0 2475
ENST00000474216 EXOSC10-003 retained_intron Homo_sapiens 0 518
ENST00000485606 EXOSC10-011 processed_transcript Homo_sapiens 0 337
ENST00000490565 EXOSC10-005 retained_intron Homo_sapiens 4e-33 145

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