C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: exosome component 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000017264 Exosc10 10090 + 4:148558429-148582401 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000017408 Exosc10-001 148558429-148582401 protein_coding
  ENSMUST00000076022 Exosc10-005 148558462-148582401 protein_coding
  ENSMUST00000097781 Exosc10-006 148558455-148582393 nonsense_mediated_decay
  ENSMUST00000126897 Exosc10-004 148568415-148576502 retained_intron
  ENSMUST00000150723 Exosc10-003 148563075-148564171 nonsense_mediated_decay
  ENSMUST00000173154 Exosc10-007 148558431-148582390 processed_transcript
  ENSMUST00000173767 Exosc10-008 148566357-148576613 retained_intron
  ENSMUST00000173892 Exosc10-009 148576166-148582321 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017408ENSMUST00000076022ENSMUST00000097781ENSMUST00000173154ENSMUST00000173767ENSMUST00000173892
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017408 1.109±0.00 N/A 8.988±1.02 7.750±2.88 N/A 1.228±0.01 2.265±0.44 2.882±1.07 6.546±1.68 N/A 5.335±0.85 15.752±1.41 19.796±14.83 10.530±1.47
ENSMUST00000076022 N/A N/A N/A 12.192±0.00 1.710±0.22 N/A 1.220±0.00 1.721±0.00 0.963±0.36 1.639±0.00 N/A 13.223±0.00 25.904±9.73 14.859±12.00
ENSMUST00000097781 3.061±0.00 1.476±0.00 2.960±0.06 4.748±0.30 1.538±0.00 N/A N/A 1.176±0.00 0.749±0.18 2.477±0.14 1.916±0.54 4.484±1.70 N/A 2.347±0.00
ENSMUST00000173154 N/A N/A N/A 4.952±0.00 N/A N/A N/A N/A N/A N/A 1.154±0.02 N/A N/A 12.275±0.00
ENSMUST00000173767 N/A N/A N/A N/A N/A N/A N/A N/A 1.518±0.00 N/A N/A N/A N/A N/A
ENSMUST00000173892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 37.050±0.00 165.378±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JY CIL_0008JY_0002 VISTA 4:148408124-149009196
CIL_0008JG CIL_0008JG_0002 VISTA 4:148444314-149044861
CIL_0008RU CIL_0008RU_0002 VISTA 4:148508781-149109416
CIL_0008S2 CIL_0008S2_0002 VISTA 4:148555953-149160332

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000176 IEA nuclear exosome (RNase complex)
GO:0000178 ISS exosome (RNase complex)
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000460 IEA maturation of 5.8S rRNA
GO:0000956 IEA nuclear-transcribed mRNA catabolic process
GO:0003676 IEA nucleic acid binding
GO:0004532 IEA exoribonuclease activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 ISS nucleolus
GO:0005737 ISS cytoplasm
GO:0006396 IEA RNA processing
GO:0008408 IEA 3'-5' exonuclease activity
GO:0009048 IMP dosage compensation by inactivation of X chromosome
GO:0016020 IEA membrane
GO:0035327 IEA transcriptionally active chromatin
GO:0044822 IEA poly(A) RNA binding
GO:0071028 IEA nuclear mRNA surveillance
GO:0071034 IEA CUT catabolic process
GO:0071035 IEA nuclear polyadenylation-dependent rRNA catabolic process
GO:0071044 ISS histone mRNA catabolic process
GO:0071048 IEA nuclear retention of unspliced pre-mRNA at the site of transcription
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis
GO:0090503 IEA RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037708 exosc10 exosome component 10 protein_coding Danio_rerio
ENSG00000171824 EXOSC10 exosome component 10 protein_coding Homo_sapiens

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