C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lin-7 homolog A (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020057 Lin7a-201 ENSMUSG00000019906 10090 + 10:107271843-107425143 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020057
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020057 0.518±0.25 0.069±0.03 0.416±0.03 3.412±0.85 0.276±0.08 0.259±0.06 0.197±0.03 0.726±0.19 1.472±1.25 0.025±0.01 0.347±0.08 0.215±0.13 0.041±0.04 9.015±4.94

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005923 IEA tight junction
GO:0006887 IEA exocytosis
GO:0007269 IGI neurotransmitter secretion
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0016323 IDA basolateral plasma membrane
GO:0030165 IEA PDZ domain binding
GO:0043005 IEA neuron projection
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane
GO:0048489 IMP synaptic vesicle transport
GO:0048839 IDA inner ear development
GO:0070062 IEA extracellular vesicular exosome
GO:0097016 IEA L27 domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261203 LIN7A-002 nonsense_mediated_decay Homo_sapiens 0 695
ENST00000549417 LIN7A-003 protein_coding Homo_sapiens 0 688
ENST00000552093 LIN7A-004 protein_coding Homo_sapiens 0 553
ENST00000552864 LIN7A-001 protein_coding Homo_sapiens 0 1262
ENST00000616449 ACSS3-008 processed_transcript Homo_sapiens 2e-39 169

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