C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hect domain and RLD 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020258 Herc4-201 ENSMUSG00000020064 10090 + 10:63243797-63317881 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020258
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020258 5.711±1.59 6.930±1.27 12.819±0.11 5.609±0.49 4.630±0.97 5.703±0.74 3.373±0.48 5.388±0.64 8.017±3.16 5.532±1.46 3.877±0.85 7.009±3.32 12.914±3.05 21.793±5.37

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IBA ubiquitin-protein transferase activity
GO:0005634 IBA nucleus
GO:0005737 IBA cytoplasm
GO:0007283 IMP spermatogenesis
GO:0016567 TAS protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030154 IEA cell differentiation
GO:0042787 IBA protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000277817 HERC4-002 protein_coding Homo_sapiens 0 3845
ENST00000373700 HERC4-001 protein_coding Homo_sapiens 0 4610
ENST00000395185 HERC4-011 processed_transcript Homo_sapiens 0 449
ENST00000395198 HERC4-009 protein_coding Homo_sapiens 0 4508
ENST00000412272 HERC4-008 protein_coding Homo_sapiens 0 3297
ENST00000427635 HERC4-010 nonsense_mediated_decay Homo_sapiens 0 1923
ENST00000460168 HERC4-004 retained_intron Homo_sapiens 0 477
ENST00000463478 HERC4-007 retained_intron Homo_sapiens 0 529
ENST00000473533 HERC4-016 nonsense_mediated_decay Homo_sapiens 0 3363
ENST00000480158 HERC4-003 processed_transcript Homo_sapiens 0 455
ENST00000492996 HERC4-006 protein_coding Homo_sapiens 0 453
ENST00000505760 HERC4-012 processed_transcript Homo_sapiens 0 442
ENST00000506515 HERC4-013 protein_coding Homo_sapiens 0 259
ENST00000513996 HERC4-015 protein_coding Homo_sapiens 0 667
ENST00000515753 HERC4-014 processed_transcript Homo_sapiens 2e-22 110

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