C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB3A interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020375 Rab3ip-201 ENSMUSG00000064181 10090 - 10:116905784-116950380 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020375
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020375 6.409±2.52 9.682±1.46 6.667±4.63 4.979±1.49 4.900±0.85 6.655±1.36 8.813±1.79 49.258±21.85 3.266±2.67 7.083±4.45 0.846±0.18 7.100±3.63 8.720±5.49 13.952±5.81

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 ISS nucleus
GO:0005829 ISS cytosol
GO:0005856 IEA cytoskeleton
GO:0015031 IEA protein transport
GO:0017112 ISS Rab guanyl-nucleotide exchange factor activity
GO:0032851 ISS positive regulation of Rab GTPase activity
GO:0042995 IEA cell projection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000247833 RAB3IP-003 protein_coding Homo_sapiens 0 937
ENST00000362025 RAB3IP-002 protein_coding Homo_sapiens 0 545
ENST00000378809 RAB3IP-009 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000417413 RAB3IP-005 nonsense_mediated_decay Homo_sapiens 0 394
ENST00000481897 RAB3IP-007 retained_intron Homo_sapiens 0 316
ENST00000483530 RAB3IP-004 protein_coding Homo_sapiens 0 545
ENST00000526994 RAB3IP-016 protein_coding Homo_sapiens 0 438
ENST00000550437 AC025263.3-001 nonsense_mediated_decay Homo_sapiens 0 248
ENST00000550536 RAB3IP-001 protein_coding Homo_sapiens 0 937
ENST00000550847 RAB3IP-017 protein_coding Homo_sapiens 0 651
ENST00000551641 RAB3IP-008 protein_coding Homo_sapiens 0 937
ENST00000552199 RAB3IP-010 nonsense_mediated_decay Homo_sapiens 0 394
ENST00000552610 RAB3IP-018 retained_intron Homo_sapiens 0 394
ENST00000553099 RAB3IP-011 protein_coding Homo_sapiens 0 937

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