C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin polyglutamylase complex subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020552 Tpgs1-201 ENSMUSG00000020308 10090 + 10:79669410-79676126 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020552
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020552 26.194±1.39 52.783±6.78 16.196±2.25 24.493±2.83 28.847±13.36 36.018±4.11 11.640±3.19 27.054±5.11 17.329±4.07 30.283±1.82 11.298±1.41 40.299±19.62 14.382±5.75 14.758±5.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_00043J CIL_00043J_0002 CGP 10:79664574-79676126
CIL_0007DQ CIL_0007DQ_0002 CGP 10:79669410-79688394

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0005874 IEA microtubule
GO:0007268 IMP synaptic transmission
GO:0007275 IEA multicellular organismal development
GO:0007288 IMP sperm axoneme assembly
GO:0008017 IMP microtubule binding
GO:0015631 IDA tubulin binding
GO:0016021 ISS integral component of membrane
GO:0018095 IMP protein polyglutamylation
GO:0030534 IMP adult behavior
GO:0031514 IEA motile cilium
GO:0051648 IMP vesicle localization
GO:0070740 IDA tubulin-glutamic acid ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359315 TPGS1-001 protein_coding Homo_sapiens 0 869
ENST00000588278 TPGS1-002 retained_intron Homo_sapiens 0 377

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