C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RUN and FYVE domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020643 Rufy1-001 ENSMUSG00000020375 10090 - 11:50389286-50431125 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020643
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020643 7.498±0.68 23.517±2.24 18.395±5.12 9.123±4.27 10.388±3.93 11.108±0.73 8.795±1.30 15.538±1.44 4.751±0.60 12.984±1.50 4.888±2.16 13.470±4.25 4.542±2.38 1.518±0.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004F3 CIL_0004F3_0002 CGP 11:50376990-50431125

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006897 IEA endocytosis
GO:0008289 IEA lipid binding
GO:0008565 IDA protein transporter activity
GO:0015031 IDA protein transport
GO:0016020 IEA membrane
GO:0030100 IDA regulation of endocytosis
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000319449 RUFY1-001 protein_coding Homo_sapiens 0 2398
ENST00000393438 RUFY1-005 protein_coding Homo_sapiens 0 2183
ENST00000393448 RUFY1-003 nonsense_mediated_decay Homo_sapiens 0 939
ENST00000437570 RUFY1-002 protein_coding Homo_sapiens 0 2183
ENST00000502984 RUFY1-006 protein_coding Homo_sapiens 0 652
ENST00000503514 RUFY1-007 processed_transcript Homo_sapiens 0 244
ENST00000503583 RUFY1-014 retained_intron Homo_sapiens 0 233
ENST00000507569 RUFY1-008 retained_intron Homo_sapiens 0 409
ENST00000508609 RUFY1-009 protein_coding Homo_sapiens 0 612
ENST00000508797 RUFY1-015 processed_transcript Homo_sapiens 0 217
ENST00000509797 RUFY1-013 retained_intron Homo_sapiens 0 411
ENST00000514238 RUFY1-011 processed_transcript Homo_sapiens 0 556

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