C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatidylcholine transfer protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020864 Pctp-001 ENSMUSG00000020553 10090 - 11:89982665-90002894 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020864
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020864 1.144±0.24 1.556±0.26 1.955±0.98 0.245±0.09 1.543±0.47 2.499±0.35 1.025±0.10 5.292±1.91 7.253±4.75 1.571±0.87 1.334±0.12 1.568±0.80 2.225±0.70 2.249±1.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RI CIL_0007RI_0002 VISTA 11:89417798-90019510
CIL_0004Q5 CIL_0004Q5_0002 CGP 11:89982665-90036508

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008203 IMP cholesterol metabolic process
GO:0015914 IEA phospholipid transport
GO:0031210 IEA phosphatidylcholine binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268896 PCTP-001 protein_coding Homo_sapiens 0 627
ENST00000325214 PCTP-004 protein_coding Homo_sapiens 0 499
ENST00000417982 PCTP-003 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000571489 PCTP-005 retained_intron Homo_sapiens 0 403
ENST00000572536 PCTP-010 protein_coding Homo_sapiens 0 267
ENST00000573500 PCTP-008 protein_coding Homo_sapiens 0 545
ENST00000576183 PCTP-006 protein_coding Homo_sapiens 0 544
ENST00000576221 PCTP-009 processed_transcript Homo_sapiens 0 278

Loading