C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trafficking protein particle complex 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020954 Trappc12-201 ENSMUSG00000020628 10090 - 12:28690629-28750453 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020954
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020954 5.718±1.19 6.936±2.13 4.446±0.97 5.109±0.28 5.157±2.82 5.472±1.27 2.460±0.52 3.573±0.67 2.326±0.71 4.371±0.56 1.349±0.41 5.767±2.43 2.242±0.15 3.128±1.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EQ CIL_0008EQ_0002 VISTA 12:28516804-29118905
CIL_0006OI CIL_0006OI_0002 CGP 12:28675231-28750453
CIL_0001Q5 CIL_0001Q5_0002 CGP 12:28690629-28867491

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324266 TRAPPC12-002 protein_coding Homo_sapiens 0 1496
ENST00000382110 TRAPPC12-001 protein_coding Homo_sapiens 0 1496
ENST00000411973 TRAPPC12-005 nonsense_mediated_decay Homo_sapiens 0 309
ENST00000415624 TRAPPC12-016 protein_coding Homo_sapiens 0 808
ENST00000416918 TRAPPC12-021 protein_coding Homo_sapiens 0 425
ENST00000417243 TRAPPC12-018 nonsense_mediated_decay Homo_sapiens 0 640
ENST00000433382 TRAPPC12-008 retained_intron Homo_sapiens 0 357
ENST00000437733 TRAPPC12-020 nonsense_mediated_decay Homo_sapiens 0.000000004 66
ENST00000441983 TRAPPC12-007 protein_coding Homo_sapiens 0 643
ENST00000457845 TRAPPC12-006 nonsense_mediated_decay Homo_sapiens 0 331
ENST00000461577 TRAPPC12-011 retained_intron Homo_sapiens 0 364
ENST00000462983 TRAPPC12-012 processed_transcript Homo_sapiens 0 265
ENST00000469147 TRAPPC12-014 processed_transcript Homo_sapiens 0 416
ENST00000469400 TRAPPC12-015 processed_transcript Homo_sapiens 0 553
ENST00000473348 TRAPPC12-019 processed_transcript Homo_sapiens 0 361
ENST00000479897 TRAPPC12-013 retained_intron Homo_sapiens 0 327
ENST00000489032 TRAPPC12-022 retained_intron Homo_sapiens 0 283
ENST00000493792 TRAPPC12-017 retained_intron Homo_sapiens 0 425
ENST00000497597 TRAPPC12-004 retained_intron Homo_sapiens 0 787
ENST00000618133 AC216281.1-201 protein_coding Homo_sapiens 0 1286

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