C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 144A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020971 Rnf144a-201 ENSMUSG00000020642 10090 - 12:26306797-26415256 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020971
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020971 6.352±1.44 4.964±1.31 0.533±0.04 1.759±0.69 7.123±1.14 0.960±0.25 2.007±0.57 2.673±0.20 0.777±0.42 30.653±6.91 0.574±0.26 5.469±2.85 0.655±0.46 1.551±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00067Q CIL_00067Q_0002 CGP 12:25093801-26415256
CIL_0001EH CIL_0001EH_0002 CGP 12:26306797-26456452

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005794 IEA Golgi apparatus
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000151937 rnf144aa-201 protein_coding Danio_rerio 0 566
ENSDART00000016053 rnf144aa-001 protein_coding Danio_rerio 0 566
ENSDART00000062421 rnf144ab-201 protein_coding Danio_rerio 0 444
ENSDART00000132278 rnf144ab-001 protein_coding Danio_rerio 0 442
ENST00000320892 RNF144A-001 protein_coding Homo_sapiens 0 1247
ENST00000416587 RNF144A-003 protein_coding Homo_sapiens 0 302
ENST00000432850 RNF144A-006 protein_coding Homo_sapiens 0 915
ENST00000433456 RNF144A-005 protein_coding Homo_sapiens 0 259
ENST00000467276 RNF144A-002 processed_transcript Homo_sapiens 0 340
ENST00000471060 RNF144A-007 retained_intron Homo_sapiens 0 549

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