C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adaptor-related protein complex AP-4, sigma 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021338 Ap4s1-201 ENSMUSG00000020955 10090 + 12:51690966-51738939 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021338
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021338 7.398±0.83 4.121±2.34 21.169±4.29 18.218±9.67 6.595±1.79 2.857±1.32 13.589±0.52 7.946±1.08 4.332±1.79 5.959±1.60 42.086±4.99 5.043±3.03 9.237±1.69 5.712±1.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004EI CIL_0004EI_0002 CGP 12:51593341-51691914
CIL_0003SU CIL_0003SU_0002 CGP 12:51608541-51738939
CIL_0004EG CIL_0004EG_0002 CGP 12:51690966-51829536

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005802 TAS trans-Golgi network
GO:0005905 IEA coated pit
GO:0006886 TAS intracellular protein transport
GO:0008565 IEA protein transporter activity
GO:0016192 TAS vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216366 AP4S1-001 protein_coding Homo_sapiens 0 368
ENST00000313566 AP4S1-201 protein_coding Homo_sapiens 0 368
ENST00000334725 AP4S1-003 protein_coding Homo_sapiens 0 368
ENST00000403367 RP1-72A23.1-001 processed_pseudogene Homo_sapiens 0 484
ENST00000542754 AP4S1-002 protein_coding Homo_sapiens 0 562
ENST00000554345 AP4S1-005 protein_coding Homo_sapiens 0 346
ENST00000554609 AP4S1-004 protein_coding Homo_sapiens 0 510
ENST00000556232 AP4S1-007 protein_coding Homo_sapiens 0 337
ENST00000556480 AP4S1-009 protein_coding Homo_sapiens 0 222
ENST00000557346 AP4S1-006 protein_coding Homo_sapiens 0 523
ENST00000616371 AP4S1-202 protein_coding Homo_sapiens 0 553
ENST00000622409 AP4S1-203 protein_coding Homo_sapiens 0 562

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