C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003SU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196792-ENSG00000100478 CGP 9606 14:30893799-31096450
GeneTranscriptPositionBiotype
ENSG00000100473 (COCH)
cochlin 		ENST00000216361 (COCH-006) 30874543-30890139 protein_coding
ENST00000396618 (COCH-005) 30874559-30890618 protein_coding
ENST00000460581 (COCH-007) 30874764-30890616 protein_coding
ENST00000468826 (COCH-008) 30880587-30890616 protein_coding
ENST00000475087 (COCH-003) 30874572-30895065 protein_coding
ENST00000553772 (COCH-010) 30874559-30884618 nonsense_mediated_decay
ENST00000553833 (COCH-013) 30877336-30880496 retained_intron
ENST00000555117 (COCH-009) 30874514-30875215 retained_intron
ENST00000555881 (COCH-011) 30874763-30885620 protein_coding
ENST00000556908 (COCH-012) 30874745-30880734 protein_coding
ENST00000557065 (COCH-014) 30877574-30885532 nonsense_mediated_decay
ENSG00000196792 (STRN3)
striatin, calmodulin binding protein 3 		ENST00000355683 (STRN3-001) 30893799-31026401 protein_coding
ENST00000357479 (STRN3-002) 30895203-31026382 protein_coding
ENST00000366206 (STRN3-007) 30912066-30932398 processed_transcript
ENST00000554124 (STRN3-008) 30905417-30912311 retained_intron
ENST00000554991 (STRN3-005) 30913524-30935304 protein_coding
ENST00000555152 (STRN3-006) 30947112-30964509 protein_coding
ENST00000555358 (STRN3-003) 30895345-31026319 nonsense_mediated_decay
ENST00000556577 (STRN3-004) 30913524-30936621 protein_coding
ENSG00000258968 (RP11-829H16.5)
 ENST00000555149 (RP11-829H16.5-001) 31018446-31018796 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0003SU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020954-ENSMUSG00000020955 CGP 10090 12:51608541-51738939
GeneTranscriptPositionBiotype
ENSMUSG00000020954 (Strn3)
striatin, calmodulin binding protein 3 		ENSMUST00000013130 (Strn3-201) 51608541-51691914 protein_coding
ENSMUST00000169503 (Strn3-202) 51608541-51691914 protein_coding
ENSMUSG00000020955 (Ap4s1)
adaptor-related protein complex AP-4, sigma 1 		ENSMUST00000021338 (Ap4s1-201) 51690966-51738939 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003SU_0001ENSG00000100473ENST00000216361ENST00000396618ENST00000460581ENST00000468826ENST00000475087ENST00000553772ENST00000553833ENST00000555117ENST00000555881ENST00000556908ENST00000557065ENSG00000196792ENST00000355683ENST00000357479ENST00000366206ENST00000554124ENST00000554991ENST00000555152ENST00000555358ENST00000556577ENSG00000258968ENST00000555149CIL_0003SU_0002ENSMUSG00000020954ENSMUST00000013130ENSMUST00000169503ENSMUSG00000020955ENSMUST00000021338
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003SU_0001ENSG00000100473ENST00000216361ENSG00000196792ENST00000355683ENST00000357479ENST00000555358ENST00000556577ENSG00000258968ENST00000555149CIL_0003SU_0002ENSMUSG00000020954ENSMUST00000013130ENSMUST00000169503ENSMUSG00000020955ENSMUST00000021338
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100473 ENST00000216361 N/A 4.081±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000396618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460581 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000196792 ENST00000355683 7.924±0.00 5.694±0.00 1.773±0.00 3.216±0.31 5.137±2.46 7.054±2.08 5.132±2.61 5.099±1.88 5.084±1.32 4.346±1.72 13.093±10.87 8.133±3.92 3.239±1.68 12.432±3.53
ENST00000357479 N/A N/A N/A 2.284±0.19 2.205±0.47 N/A N/A 2.083±0.00 N/A N/A N/A 4.375±1.55 N/A 8.684±0.00
ENST00000366206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555358 N/A N/A 1.184±0.00 N/A N/A N/A 1.474±0.00 N/A 14.298±0.00 N/A N/A 5.960±0.00 2.806±0.00 N/A
ENST00000556577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.841±0.00
ENSG00000258968 ENST00000555149 0.300±0.00 0.136±0.00 N/A N/A 0.338±0.03 2.075±0.00 0.145±0.06 N/A 1.199±0.00 0.323±0.00 N/A 0.868±0.87 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020954 ENSMUST00000013130 N/A N/A 4.131±0.33 10.005±2.26 1.903±0.00 2.973±0.00 N/A 1.509±0.16 3.224±2.01 3.195±0.00 N/A 4.651±1.27 4.251±1.45 4.284±1.57
ENSMUST00000169503 12.816±2.47 69.388±5.80 20.335±7.05 6.646±1.33 14.534±2.68 13.196±3.12 12.921±2.24 9.404±0.72 8.643±4.91 19.847±6.84 34.541±9.69 26.579±9.89 12.535±5.54 2.623±0.51
ENSMUSG00000020955 ENSMUST00000021338 7.398±0.83 4.121±2.34 21.169±4.29 18.218±9.67 6.595±1.79 2.857±1.32 13.589±0.52 7.946±1.08 4.332±1.79 5.959±1.60 42.086±4.99 5.043±3.03 9.237±1.69 5.712±1.85

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