C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein phosphatase 2, regulatory subunit B'', gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021410 Ppp2r3c-201 ENSMUSG00000021022 10090 - 12:55280814-55303000 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021410
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021410 2.676±0.63 1.486±0.43 9.379±1.75 9.806±3.51 2.496±0.34 2.171±0.52 2.775±0.40 3.108±0.42 4.693±4.28 1.386±0.41 6.243±0.96 3.287±2.59 4.440±1.15 10.418±3.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045K CIL_00045K_0002 CGP 12:55199533-55303000
CIL_00028P CIL_00028P_0002 CGP 12:55280814-55382533

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001782 IMP B cell homeostasis
GO:0002759 IMP regulation of antimicrobial humoral response
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0032147 IMP activation of protein kinase activity
GO:0043029 IMP T cell homeostasis
GO:0045579 IMP positive regulation of B cell differentiation
GO:0048536 IMP spleen development
GO:0050864 IMP regulation of B cell activation
GO:0051900 IMP regulation of mitochondrial depolarization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261475 PPP2R3C-001 protein_coding Homo_sapiens 0 1873
ENST00000553273 PPP2R3C-005 nonsense_mediated_decay Homo_sapiens 0 822
ENST00000553282 PPP2R3C-018 nonsense_mediated_decay Homo_sapiens 0 414
ENST00000553901 FAM177A1-009 retained_intron Homo_sapiens 1e-16 94
ENST00000554222 PPP2R3C-003 nonsense_mediated_decay Homo_sapiens 0 1622
ENST00000554265 PPP2R3C-006 nonsense_mediated_decay Homo_sapiens 0 320
ENST00000554361 PPP2R3C-019 protein_coding Homo_sapiens 0 453
ENST00000554488 PPP2R3C-011 nonsense_mediated_decay Homo_sapiens 0 460
ENST00000554563 PPP2R3C-012 nonsense_mediated_decay Homo_sapiens 0 370
ENST00000554899 PPP2R3C-013 nonsense_mediated_decay Homo_sapiens 0 460
ENST00000555219 PPP2R3C-015 protein_coding Homo_sapiens 0 424
ENST00000555260 FAM177A1-008 nonsense_mediated_decay Homo_sapiens 1e-17 95
ENST00000555614 PPP2R3C-014 protein_coding Homo_sapiens 0 702
ENST00000555630 PPP2R3C-020 nonsense_mediated_decay Homo_sapiens 0 507
ENST00000555644 PPP2R3C-008 protein_coding Homo_sapiens 0 699
ENST00000555726 PPP2R3C-017 nonsense_mediated_decay Homo_sapiens 0 444
ENST00000556254 PPP2R3C-010 retained_intron Homo_sapiens 0 375
ENST00000557074 PPP2R3C-009 nonsense_mediated_decay Homo_sapiens 0 477
ENST00000557217 PPP2R3C-002 nonsense_mediated_decay Homo_sapiens 0 1594
ENST00000557278 PPP2R3C-004 protein_coding Homo_sapiens 0 699
ENST00000557288 PPP2R3C-016 nonsense_mediated_decay Homo_sapiens 0 556
ENST00000557773 PPP2R3C-007 retained_intron Homo_sapiens 0 375

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