C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ARP10 actin-related protein 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021479 Actr10-201 ENSMUSG00000021076 10090 + 12:70937857-70964718 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021479
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021479 5.336±2.04 4.170±0.96 5.877±0.44 12.403±3.81 3.323±1.20 3.638±1.02 3.541±0.70 7.002±1.06 4.365±1.45 4.937±0.72 8.114±0.88 4.540±2.84 7.079±2.23 13.852±2.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001K7 CIL_0001K7_0002 CGP 12:70937857-70996347

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005869 IDA dynactin complex
GO:0007018 IDA microtubule-based movement

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254286 ACTR10-002 protein_coding Homo_sapiens 0 1805
ENST00000545307 ACTR10-001 nonsense_mediated_decay Homo_sapiens 0 1746
ENST00000553907 ACTR10-021 nonsense_mediated_decay Homo_sapiens 0 750
ENST00000554402 ACTR10-018 nonsense_mediated_decay Homo_sapiens 0 1177
ENST00000554642 ACTR10-011 protein_coding Homo_sapiens 0 630
ENST00000554790 ACTR10-019 retained_intron Homo_sapiens 0 647
ENST00000555229 ACTR10-017 nonsense_mediated_decay Homo_sapiens 0 1685
ENST00000555337 ACTR10-014 nonsense_mediated_decay Homo_sapiens 0 488
ENST00000555965 ACTR10-020 retained_intron Homo_sapiens 0 617
ENST00000556243 ACTR10-003 nonsense_mediated_decay Homo_sapiens 0 287
ENST00000556312 ACTR10-004 retained_intron Homo_sapiens 0 492
ENST00000556449 ACTR10-009 retained_intron Homo_sapiens 0 281
ENST00000556694 ACTR10-012 retained_intron Homo_sapiens 0 538
ENST00000556748 ACTR10-005 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000557583 ACTR10-008 retained_intron Homo_sapiens 1e-34 150
ENST00000557711 ACTR10-006 retained_intron Homo_sapiens 0 1134

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