C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family D (ALD), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021666 Abcd4-201 ENSMUSG00000021240 10090 - 12:84602531-84617466 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021666
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021666 4.713±1.75 7.036±3.19 8.727±3.04 2.323±0.19 4.041±2.04 4.298±1.76 2.391±0.91 18.126±2.28 2.866±0.91 4.092±0.72 2.015±0.25 3.014±1.27 12.705±5.75 0.309±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000232 CIL_000232_0002 CGP 12:84569762-84617466
CIL_000231 CIL_000231_0002 CGP 12:84602531-84651455

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005777 IEA peroxisome
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006200 IEA ATP catabolic process
GO:0009235 ISS cobalamin metabolic process
GO:0016021 IEA integral component of membrane
GO:0042626 IEA ATPase activity, coupled to transmembrane movement of substances
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356924 ABCD4-001 protein_coding Homo_sapiens 0 2189
ENST00000460308 ABCD4-004 nonsense_mediated_decay Homo_sapiens 0 597
ENST00000465085 ABCD4-017 retained_intron Homo_sapiens 0 231
ENST00000466822 ABCD4-013 retained_intron Homo_sapiens 0 364
ENST00000469672 ABCD4-003 nonsense_mediated_decay Homo_sapiens 0 462
ENST00000470637 ABCD4-009 nonsense_mediated_decay Homo_sapiens 0 298
ENST00000474270 ABCD4-014 nonsense_mediated_decay Homo_sapiens 0 494
ENST00000475240 ABCD4-008 retained_intron Homo_sapiens 0 337
ENST00000481348 ABCD4-012 nonsense_mediated_decay Homo_sapiens 0 388
ENST00000481935 ABCD4-002 nonsense_mediated_decay Homo_sapiens 0 1823
ENST00000489678 ABCD4-015 retained_intron Homo_sapiens 0 405
ENST00000496015 ABCD4-011 retained_intron Homo_sapiens 0 560
ENST00000553486 ABCD4-019 nonsense_mediated_decay Homo_sapiens 0 1899
ENST00000553745 ABCD4-018 nonsense_mediated_decay Homo_sapiens 0 1232
ENST00000553998 ABCD4-031 nonsense_mediated_decay Homo_sapiens 0 448
ENST00000554453 ABCD4-029 nonsense_mediated_decay Homo_sapiens 0 405
ENST00000555617 ABCD4-022 nonsense_mediated_decay Homo_sapiens 0 244
ENST00000555904 ABCD4-028 protein_coding Homo_sapiens 0 370
ENST00000556119 ABCD4-020 nonsense_mediated_decay Homo_sapiens 0 887
ENST00000556517 ABCD4-026 protein_coding Homo_sapiens 0 388
ENST00000556971 ABCD4-021 protein_coding Homo_sapiens 0 719
ENST00000557588 ABCD4-023 protein_coding Homo_sapiens 8e-28 128

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