C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FBJ osteosarcoma oncogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021674 Fos-001 ENSMUSG00000021250 10090 + 12:85473890-85477273 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021674
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021674 4.353±1.35 2.223±0.15 12.855±2.22 0.444±0.16 12.624±3.81 80.836±12.46 2.960±0.32 0.508±0.07 0.548±0.34 15.622±5.65 1.224±0.29 9.782±3.32 11.192±8.81 0.301±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084S CIL_00084S_0002 VISTA 12:85135374-85736988
CIL_00085H CIL_00085H_0002 VISTA 12:85154385-85756659
CIL_0007PT CIL_0007PT_0002 VISTA 12:85154400-85756289
CIL_0004K7 CIL_0004K7_0003 CGP 12:85340614-85477273
CIL_0002AD CIL_0002AD_0002 CGP 12:85473890-85639878

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0001661 IEA conditioned taste aversion
GO:0003677 IDA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IMP sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005783 IEA endoplasmic reticulum
GO:0006355 IMP regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0007179 IEA transforming growth factor beta receptor signaling pathway
GO:0007399 IMP nervous system development
GO:0007565 IEA female pregnancy
GO:0007568 IEA aging
GO:0008134 IEA transcription factor binding
GO:0009409 IEA response to cold
GO:0009416 IEA response to light stimulus
GO:0009612 IEA response to mechanical stimulus
GO:0009629 IEA response to gravity
GO:0009636 IEA response to toxic substance
GO:0014070 IEA response to organic cyclic compound
GO:0016020 IEA membrane
GO:0030431 IEA sleep
GO:0031668 IMP cellular response to extracellular stimulus
GO:0032496 IEA response to lipopolysaccharide
GO:0032570 IEA response to progesterone
GO:0032870 IEA cellular response to hormone stimulus
GO:0034097 IEA response to cytokine
GO:0034614 IEA cellular response to reactive oxygen species
GO:0035902 IEA response to immobilization stress
GO:0035914 IMP skeletal muscle cell differentiation
GO:0042493 IDA response to drug
GO:0043005 IEA neuron projection
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045672 IDA positive regulation of osteoclast differentiation
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0051412 IEA response to corticosterone
GO:0051591 IEA response to cAMP
GO:0060395 IEA SMAD protein signal transduction
GO:0070412 IEA R-SMAD binding
GO:0071277 IDA cellular response to calcium ion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303562 FOS-001 protein_coding Homo_sapiens 0 1716
ENST00000535987 FOS-002 protein_coding Homo_sapiens 0 1053
ENST00000554212 FOS-007 protein_coding Homo_sapiens 0 427
ENST00000554617 FOS-005 protein_coding Homo_sapiens 0 514
ENST00000555242 FOS-008 protein_coding Homo_sapiens 0 584
ENST00000555347 FOS-011 protein_coding Homo_sapiens 0 1153
ENST00000555672 FOS-009 protein_coding Homo_sapiens 0 254
ENST00000555686 FOS-004 protein_coding Homo_sapiens 0 1456
ENST00000556324 FOS-006 processed_transcript Homo_sapiens 0 267
ENST00000557139 FOS-010 protein_coding Homo_sapiens 0 252

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