C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hyaluronic acid binding protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021929 Habp4-201 ENSMUSG00000021476 10090 + 13:64161866-64186536 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021929
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021929 5.720±1.11 7.324±0.45 13.970±0.97 45.513±54.08 5.495±1.48 5.004±0.65 14.824±0.77 13.050±0.93 11.390±3.94 10.881±1.28 9.674±0.39 9.148±4.96 6.014±2.23 145.449±108.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Z5 CIL_0008Z5_0002 VISTA 13:63905082-64505639
CIL_0002J9 CIL_0002J9_0002 CGP 13:64133022-64186536
CIL_0002JC CIL_0002JC_0002 CGP 13:64161866-64274973

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005540 ISA hyaluronic acid binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0030017 IEA sarcomere
GO:0030212 ISA hyaluronan metabolic process
GO:0043392 IEA negative regulation of DNA binding
GO:0071260 IEA cellular response to mechanical stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375249 HABP4-001 protein_coding Homo_sapiens 0 1358
ENST00000375251 HABP4-003 protein_coding Homo_sapiens 0 623
ENST00000466976 HABP4-002 processed_transcript Homo_sapiens 0 503

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