C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatidylserine synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021990 Ptdss1-201 ENSMUSG00000021518 10090 + 13:66932830-66998401 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000021990
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000021990 20.293±3.11 13.727±2.83 13.086±6.35 15.307±5.71 19.399±3.69 22.217±2.84 16.031±0.69 19.881±1.25 10.517±4.83 20.441±0.79 20.542±2.98 16.249±5.78 20.180±7.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SY CIL_0006SY_0002 CGP 13:66906968-66998401

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006659 IEA phosphatidylserine biosynthetic process
GO:0016020 ISS membrane
GO:0016021 IEA integral component of membrane
GO:0016740 IEA transferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000010792 ptdss1a-001 protein_coding Danio_rerio 0 828
ENST00000337004 PTDSS1-002 nonsense_mediated_decay Homo_sapiens 0 1347
ENST00000517309 PTDSS1-001 protein_coding Homo_sapiens 0 2041
ENST00000517557 PTDSS1-005 retained_intron Homo_sapiens 0 654
ENST00000518776 PTDSS1-004 processed_transcript Homo_sapiens 0 758
ENST00000522072 PTDSS1-003 protein_coding Homo_sapiens 0 1062

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