C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adaptor-related protein complex 3, beta 1 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022196 Ap3b1-201 ENSMUSG00000021686 10090 + 13:94358960-94566316 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022196
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022196 11.009±0.98 8.544±2.85 14.372±1.30 8.804±1.02 8.966±1.58 13.478±0.93 4.370±0.20 10.695±1.05 8.162±1.35 8.267±0.87 2.307±0.67 12.391±5.58 26.293±7.29 38.745±11.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091D CIL_00091D_0002 VISTA 13:94295529-94897246

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005765 IEA lysosomal membrane
GO:0005802 TAS trans-Golgi network
GO:0006622 IMP protein targeting to lysosome
GO:0006829 TAS zinc ion transport
GO:0006886 TAS intracellular protein transport
GO:0007596 IMP blood coagulation
GO:0008089 IMP anterograde axon cargo transport
GO:0016020 IEA membrane
GO:0016192 TAS vesicle-mediated transport
GO:0019882 IMP antigen processing and presentation
GO:0019903 IEA protein phosphatase binding
GO:0030123 IEA AP-3 adaptor complex
GO:0030742 IEA GTP-dependent protein binding
GO:0031410 IEA cytoplasmic vesicle
GO:0032438 IEA melanosome organization
GO:0048007 IMP antigen processing and presentation, exogenous lipid antigen via MHC class Ib
GO:0048490 IMP anterograde synaptic vesicle transport
GO:0051138 IMP positive regulation of NK T cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255194 AP3B1-001 protein_coding Homo_sapiens 0 2510
ENST00000517561 AP3B1-004 processed_transcript Homo_sapiens 0 508
ENST00000519295 AP3B1-002 protein_coding Homo_sapiens 0 2442
ENST00000520122 AP3B1-008 retained_intron Homo_sapiens 0 202
ENST00000522901 AP3B1-007 protein_coding Homo_sapiens 0 880

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