C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NADH dehydrogenase (ubiquinone) Fe-S protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022286 Ndufs4-201 ENSMUSG00000021764 10090 - 13:114287795-114388094 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022286
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022286 50.049±6.20 20.699±3.26 14.587±5.52 14.483±5.25 30.328±13.80 39.384±20.08 47.933±36.00 43.394±23.65 26.228±11.93 28.666±2.73 39.681±19.33 46.934±18.73 16.071±11.28 21.573±17.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PO CIL_0007PO_0002 UCNEbase 13:113880053-114452500
CIL_0005Y5 CIL_0005Y5_0002 CGP 13:114287795-114458730

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001932 ISO regulation of protein phosphorylation
GO:0005739 IDA mitochondrion
GO:0005747 IDA mitochondrial respiratory chain complex I
GO:0007420 IEA brain development
GO:0008137 IDA NADH dehydrogenase (ubiquinone) activity
GO:0019933 IEA cAMP-mediated signaling
GO:0022900 IEA electron transport chain
GO:0032981 IEA mitochondrial respiratory chain complex I assembly
GO:0045271 IEA respiratory chain complex I
GO:0045333 IEA cellular respiration
GO:0048146 IEA positive regulation of fibroblast proliferation
GO:0051591 IEA response to cAMP
GO:0072593 IEA reactive oxygen species metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296684 NDUFS4-001 protein_coding Homo_sapiens 0 784
ENST00000502423 NDUFS4-002 nonsense_mediated_decay Homo_sapiens 0 379
ENST00000506765 NDUFS4-005 protein_coding Homo_sapiens 0 381
ENST00000506974 NDUFS4-004 nonsense_mediated_decay Homo_sapiens 0 623
ENST00000507026 NDUFS4-003 nonsense_mediated_decay Homo_sapiens 0 562
ENST00000509443 NDUFS4-006 retained_intron Homo_sapiens 0 355

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