| Source ID |
Type |
Tax ID |
Position |
| ARL15 |
UCNEbase |
7955 |
5:41955922-41956151  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007PO_0003 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007PO_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007PO_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000134363' => 'follistatin',
'ENSG00000164258' => 'NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)',
'ENSG00000185305' => 'ADP-ribosylation factor-like 15',
'ENSG00000207627' => 'microRNA 581',
'ENSG00000217791' => 'argininosuccinate synthetase 1 pseudogene 9',
'ENSG00000222960' => 'RNA, U6 small nuclear 272, pseudogene',
'ENSG00000238508' => null,
'ENSG00000241230' => 'RNA, 7SL, cytoplasmic 801, pseudogene',
'ENSG00000250447' => null,
'ENSG00000265421' => 'microRNA 4459',
'ENSG00000272416' => null,
'ENSMUSG00000021764' => 'NADH dehydrogenase (ubiquinone) Fe-S protein 4',
'ENSMUSG00000021765' => 'follistatin',
'ENSMUSG00000042348' => 'ADP-ribosylation factor-like 15'
),
'gene_name_arr' => array(
'ENSG00000134363' => 'FST',
'ENSG00000164258' => 'NDUFS4',
'ENSG00000185305' => 'ARL15',
'ENSG00000207627' => 'MIR581',
'ENSG00000217791' => 'ASS1P9',
'ENSG00000222960' => 'RNU6-272P',
'ENSG00000238508' => 'AC024569.1',
'ENSG00000241230' => 'RN7SL801P',
'ENSG00000250447' => 'CTD-2081C10.1',
'ENSG00000265421' => 'MIR4459',
'ENSG00000272416' => 'CTD-2081C10.7',
'ENSMUSG00000021764' => 'Ndufs4',
'ENSMUSG00000021765' => 'Fst',
'ENSMUSG00000042348' => 'Arl15'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 19 => 'Bladder',
(int) 27 => 'Brain',
(int) 40 => 'Breast',
(int) 52 => 'Colon',
(int) 65 => 'Heart',
(int) 79 => 'Kidney',
(int) 93 => 'Liver',
(int) 104 => 'Lung',
(int) 115 => 'Muscle',
(int) 126 => 'Ovary',
(int) 142 => 'Placenta',
(int) 154 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 30,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000256759' => array(
'start' => '53480409',
'end' => '53487134',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FST-001'
),
'ENST00000396947' => array(
'start' => '53480626',
'end' => '53487106',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FST-003'
),
'ENST00000491717' => array(
'start' => '53482694',
'end' => '53484111',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'FST-002'
),
'ENST00000497789' => array(
'start' => '53484216',
'end' => '53486092',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FST-005'
),
'ENST00000504226' => array(
'start' => '53483611',
'end' => '53486090',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FST-004'
),
'ENST00000296684' => array(
'start' => '53560635',
'end' => '53683340',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NDUFS4-001'
),
'ENST00000502423' => array(
'start' => '53560635',
'end' => '53683138',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'NDUFS4-002'
),
'ENST00000506765' => array(
'start' => '53560675',
'end' => '53683338',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NDUFS4-005'
),
'ENST00000506974' => array(
'start' => '53560647',
'end' => '53683338',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'NDUFS4-004'
),
'ENST00000507026' => array(
'start' => '53560633',
'end' => '53683219',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'NDUFS4-003'
),
'ENST00000509443' => array(
'start' => '53646195',
'end' => '53658789',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'NDUFS4-006'
),
'ENST00000502271' => array(
'start' => '53883945',
'end' => '54310582',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ARL15-001'
),
'ENST00000504924' => array(
'start' => '53884784',
'end' => '54310573',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ARL15-004'
),
'ENST00000505383' => array(
'start' => '54154391',
'end' => '54310573',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ARL15-005'
),
'ENST00000505630' => array(
'start' => '54113133',
'end' => '54310576',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ARL15-006'
),
'ENST00000507646' => array(
'start' => '53887365',
'end' => '54310576',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ARL15-003'
),
'ENST00000510591' => array(
'start' => '53886445',
'end' => '54310415',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ARL15-002'
),
'ENST00000620747' => array(
'start' => '53884784',
'end' => '54310573',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ARL15-201'
),
'ENST00000384895' => array(
'start' => '53951504',
'end' => '53951599',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR581-201'
),
'ENST00000513426' => array(
'start' => '53859166',
'end' => '53860401',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'ASS1P9-001'
),
'ENST00000411028' => array(
'start' => '53912020',
'end' => '53912123',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-272P-201'
),
'ENST00000458939' => array(
'start' => '53609587',
'end' => '53609658',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC024569.1-201'
),
'ENST00000479462' => array(
'start' => '54048007',
'end' => '54048308',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL801P-201'
),
'ENST00000504552' => array(
'start' => '53776644',
'end' => '53819686',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2081C10.1-001'
),
'ENST00000511953' => array(
'start' => '53777014',
'end' => '53819676',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2081C10.1-002'
),
'ENST00000581837' => array(
'start' => '54075518',
'end' => '54075583',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR4459-201'
),
'ENST00000606482' => array(
'start' => '53880293',
'end' => '53881051',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2081C10.7-001'
),
'ENSMUST00000022286' => array(
'start' => '114287795',
'end' => '114388094',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ndufs4-201'
),
'ENSMUST00000022287' => array(
'start' => '114452262',
'end' => '114458730',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fst-201'
),
'ENSMUST00000091201' => array(
'start' => '113794505',
'end' => '114157461',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Arl15-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007PO_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007PO_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007PO_0001' => array(
'genes_in_region' => array(
'ENSG00000134363' => array(
[maximum depth reached]
),
'ENSG00000164258' => array(
[maximum depth reached]
),
'ENSG00000185305' => array(
[maximum depth reached]
),
'ENSG00000207627' => array(
[maximum depth reached]
),
'ENSG00000217791' => array(
[maximum depth reached]
),
'ENSG00000222960' => array(
[maximum depth reached]
),
'ENSG00000238508' => array(
[maximum depth reached]
),
'ENSG00000241230' => array(
[maximum depth reached]
),
'ENSG00000250447' => array(
[maximum depth reached]
),
'ENSG00000265421' => array(
[maximum depth reached]
),
'ENSG00000272416' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Muscle',
(int) 22 => 'Ovary',
(int) 23 => 'Placenta',
(int) 24 => 'Ovary',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Muscle',
(int) 34 => 'Ovary',
(int) 35 => 'Adipose',
(int) 36 => 'Adrenal',
(int) 37 => 'Bladder',
(int) 38 => 'Brain',
(int) 39 => 'Breast',
(int) 40 => 'Colon',
(int) 41 => 'Heart',
(int) 42 => 'Kidney',
(int) 43 => 'Liver',
(int) 44 => 'Lung',
(int) 45 => 'Muscle',
(int) 46 => 'Ovary',
(int) 47 => 'Placenta',
(int) 48 => 'Testis',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Testis',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Bladder',
(int) 58 => 'Brain',
(int) 59 => 'Heart',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Bladder',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Liver',
(int) 69 => 'Lung',
(int) 70 => 'Colon',
(int) 71 => 'Heart',
(int) 72 => 'Lung',
(int) 73 => 'Muscle',
(int) 74 => 'Bladder',
(int) 75 => 'Breast',
(int) 76 => 'Lung',
(int) 77 => 'Kidney',
(int) 78 => 'Kidney',
(int) 79 => 'Muscle',
(int) 80 => 'Ovary',
(int) 81 => 'Breast',
(int) 82 => 'Colon',
(int) 83 => 'Testis',
(int) 84 => 'Adipose',
(int) 85 => 'Adrenal',
(int) 86 => 'Brain',
(int) 87 => 'Kidney',
(int) 88 => 'Liver',
(int) 89 => 'Muscle',
(int) 90 => 'Ovary',
(int) 91 => 'Testis',
(int) 92 => 'Kidney',
(int) 93 => 'Liver',
(int) 94 => 'Ovary',
(int) 95 => 'Adrenal',
(int) 96 => 'Brain',
(int) 97 => 'Colon',
(int) 98 => 'Kidney',
(int) 99 => 'Adrenal',
(int) 100 => 'Bladder',
(int) 101 => 'Brain',
(int) 102 => 'Breast',
(int) 103 => 'Colon',
(int) 104 => 'Heart',
(int) 105 => 'Kidney',
(int) 106 => 'Liver',
(int) 107 => 'Lung',
(int) 108 => 'Placenta',
(int) 109 => 'Brain',
(int) 110 => 'Heart',
(int) 111 => 'Testis',
(int) 112 => 'Testis',
(int) 113 => 'Adrenal',
(int) 114 => 'Heart',
(int) 115 => 'Adipose',
(int) 116 => 'Adrenal',
(int) 117 => 'Brain',
(int) 118 => 'Breast',
(int) 119 => 'Colon',
(int) 120 => 'Heart',
(int) 121 => 'Kidney',
(int) 122 => 'Liver',
(int) 123 => 'Lung',
(int) 124 => 'Ovary',
(int) 125 => 'Placenta',
(int) 126 => 'Testis'
)
),
'CIL_0007PO_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000021764' => array(
[maximum depth reached]
),
'ENSMUSG00000021765' => array(
[maximum depth reached]
),
'ENSMUSG00000042348' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Muscle',
(int) 39 => 'Ovary',
(int) 40 => 'Placenta',
(int) 41 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000134363' => 'follistatin',
'ENSG00000164258' => 'NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)',
'ENSG00000185305' => 'ADP-ribosylation factor-like 15',
'ENSG00000207627' => 'microRNA 581',
'ENSG00000217791' => 'argininosuccinate synthetase 1 pseudogene 9',
'ENSG00000222960' => 'RNA, U6 small nuclear 272, pseudogene',
'ENSG00000238508' => null,
'ENSG00000241230' => 'RNA, 7SL, cytoplasmic 801, pseudogene',
'ENSG00000250447' => null,
'ENSG00000265421' => 'microRNA 4459',
'ENSG00000272416' => null,
'ENSMUSG00000021764' => 'NADH dehydrogenase (ubiquinone) Fe-S protein 4',
'ENSMUSG00000021765' => 'follistatin',
'ENSMUSG00000042348' => 'ADP-ribosylation factor-like 15'
)
$gene_name_arr = array(
'ENSG00000134363' => 'FST',
'ENSG00000164258' => 'NDUFS4',
'ENSG00000185305' => 'ARL15',
'ENSG00000207627' => 'MIR581',
'ENSG00000217791' => 'ASS1P9',
'ENSG00000222960' => 'RNU6-272P',
'ENSG00000238508' => 'AC024569.1',
'ENSG00000241230' => 'RN7SL801P',
'ENSG00000250447' => 'CTD-2081C10.1',
'ENSG00000265421' => 'MIR4459',
'ENSG00000272416' => 'CTD-2081C10.7',
'ENSMUSG00000021764' => 'Ndufs4',
'ENSMUSG00000021765' => 'Fst',
'ENSMUSG00000042348' => 'Arl15'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007PO_0001',
'tax_id' => '9606',
'chromosome' => '5',
'seq_start' => '53486896',
'seq_end' => '54215574',
'region_length' => '728678',
'region_type' => 'UCNEbase',
'el_id' => 'ARL15'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007PO_0002',
'tax_id' => '10090',
'chromosome' => '13',
'seq_start' => '113880053',
'seq_end' => '114452500',
'region_length' => '572447',
'region_type' => 'UCNEbase',
'el_id' => 'ARL15'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007PO_0003',
'tax_id' => '7955',
'chromosome' => '5',
'seq_start' => '41955922',
'seq_end' => '41956151',
'region_length' => '229',
'region_type' => 'UCNEbase',
'el_id' => 'ARL15'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 19 => 'Bladder',
(int) 27 => 'Brain',
(int) 40 => 'Breast',
(int) 52 => 'Colon',
(int) 65 => 'Heart',
(int) 79 => 'Kidney',
(int) 93 => 'Liver',
(int) 104 => 'Lung',
(int) 115 => 'Muscle',
(int) 126 => 'Ovary',
(int) 142 => 'Placenta',
(int) 154 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 30
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000256759' => array(
'start' => '53480409',
'end' => '53487134',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FST-001'
),
'ENST00000396947' => array(
'start' => '53480626',
'end' => '53487106',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FST-003'
),
'ENST00000491717' => array(
'start' => '53482694',
'end' => '53484111',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'FST-002'
),
'ENST00000497789' => array(
'start' => '53484216',
'end' => '53486092',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FST-005'
),
'ENST00000504226' => array(
'start' => '53483611',
'end' => '53486090',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FST-004'
),
'ENST00000296684' => array(
'start' => '53560635',
'end' => '53683340',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NDUFS4-001'
),
'ENST00000502423' => array(
'start' => '53560635',
'end' => '53683138',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'NDUFS4-002'
),
'ENST00000506765' => array(
'start' => '53560675',
'end' => '53683338',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NDUFS4-005'
),
'ENST00000506974' => array(
'start' => '53560647',
'end' => '53683338',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'NDUFS4-004'
),
'ENST00000507026' => array(
'start' => '53560633',
'end' => '53683219',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'NDUFS4-003'
),
'ENST00000509443' => array(
'start' => '53646195',
'end' => '53658789',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'NDUFS4-006'
),
'ENST00000502271' => array(
'start' => '53883945',
'end' => '54310582',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ARL15-001'
),
'ENST00000504924' => array(
'start' => '53884784',
'end' => '54310573',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ARL15-004'
),
'ENST00000505383' => array(
'start' => '54154391',
'end' => '54310573',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ARL15-005'
),
'ENST00000505630' => array(
'start' => '54113133',
'end' => '54310576',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ARL15-006'
),
'ENST00000507646' => array(
'start' => '53887365',
'end' => '54310576',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ARL15-003'
),
'ENST00000510591' => array(
'start' => '53886445',
'end' => '54310415',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ARL15-002'
),
'ENST00000620747' => array(
'start' => '53884784',
'end' => '54310573',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ARL15-201'
),
'ENST00000384895' => array(
'start' => '53951504',
'end' => '53951599',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR581-201'
),
'ENST00000513426' => array(
'start' => '53859166',
'end' => '53860401',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'ASS1P9-001'
),
'ENST00000411028' => array(
'start' => '53912020',
'end' => '53912123',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-272P-201'
),
'ENST00000458939' => array(
'start' => '53609587',
'end' => '53609658',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC024569.1-201'
),
'ENST00000479462' => array(
'start' => '54048007',
'end' => '54048308',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL801P-201'
),
'ENST00000504552' => array(
'start' => '53776644',
'end' => '53819686',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2081C10.1-001'
),
'ENST00000511953' => array(
'start' => '53777014',
'end' => '53819676',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2081C10.1-002'
),
'ENST00000581837' => array(
'start' => '54075518',
'end' => '54075583',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR4459-201'
),
'ENST00000606482' => array(
'start' => '53880293',
'end' => '53881051',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2081C10.7-001'
),
'ENSMUST00000022286' => array(
'start' => '114287795',
'end' => '114388094',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ndufs4-201'
),
'ENSMUST00000022287' => array(
'start' => '114452262',
'end' => '114458730',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fst-201'
),
'ENSMUST00000091201' => array(
'start' => '113794505',
'end' => '114157461',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Arl15-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007PO_0001' => array(
'genes_in_region' => array(
'ENSG00000134363' => array(
[maximum depth reached]
),
'ENSG00000164258' => array(
[maximum depth reached]
),
'ENSG00000185305' => array(
[maximum depth reached]
),
'ENSG00000207627' => array(
[maximum depth reached]
),
'ENSG00000217791' => array(
[maximum depth reached]
),
'ENSG00000222960' => array(
[maximum depth reached]
),
'ENSG00000238508' => array(
[maximum depth reached]
),
'ENSG00000241230' => array(
[maximum depth reached]
),
'ENSG00000250447' => array(
[maximum depth reached]
),
'ENSG00000265421' => array(
[maximum depth reached]
),
'ENSG00000272416' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Muscle',
(int) 22 => 'Ovary',
(int) 23 => 'Placenta',
(int) 24 => 'Ovary',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Muscle',
(int) 34 => 'Ovary',
(int) 35 => 'Adipose',
(int) 36 => 'Adrenal',
(int) 37 => 'Bladder',
(int) 38 => 'Brain',
(int) 39 => 'Breast',
(int) 40 => 'Colon',
(int) 41 => 'Heart',
(int) 42 => 'Kidney',
(int) 43 => 'Liver',
(int) 44 => 'Lung',
(int) 45 => 'Muscle',
(int) 46 => 'Ovary',
(int) 47 => 'Placenta',
(int) 48 => 'Testis',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Testis',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Bladder',
(int) 58 => 'Brain',
(int) 59 => 'Heart',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Bladder',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Liver',
(int) 69 => 'Lung',
(int) 70 => 'Colon',
(int) 71 => 'Heart',
(int) 72 => 'Lung',
(int) 73 => 'Muscle',
(int) 74 => 'Bladder',
(int) 75 => 'Breast',
(int) 76 => 'Lung',
(int) 77 => 'Kidney',
(int) 78 => 'Kidney',
(int) 79 => 'Muscle',
(int) 80 => 'Ovary',
(int) 81 => 'Breast',
(int) 82 => 'Colon',
(int) 83 => 'Testis',
(int) 84 => 'Adipose',
(int) 85 => 'Adrenal',
(int) 86 => 'Brain',
(int) 87 => 'Kidney',
(int) 88 => 'Liver',
(int) 89 => 'Muscle',
(int) 90 => 'Ovary',
(int) 91 => 'Testis',
(int) 92 => 'Kidney',
(int) 93 => 'Liver',
(int) 94 => 'Ovary',
(int) 95 => 'Adrenal',
(int) 96 => 'Brain',
(int) 97 => 'Colon',
(int) 98 => 'Kidney',
(int) 99 => 'Adrenal',
(int) 100 => 'Bladder',
(int) 101 => 'Brain',
(int) 102 => 'Breast',
(int) 103 => 'Colon',
(int) 104 => 'Heart',
(int) 105 => 'Kidney',
(int) 106 => 'Liver',
(int) 107 => 'Lung',
(int) 108 => 'Placenta',
(int) 109 => 'Brain',
(int) 110 => 'Heart',
(int) 111 => 'Testis',
(int) 112 => 'Testis',
(int) 113 => 'Adrenal',
(int) 114 => 'Heart',
(int) 115 => 'Adipose',
(int) 116 => 'Adrenal',
(int) 117 => 'Brain',
(int) 118 => 'Breast',
(int) 119 => 'Colon',
(int) 120 => 'Heart',
(int) 121 => 'Kidney',
(int) 122 => 'Liver',
(int) 123 => 'Lung',
(int) 124 => 'Ovary',
(int) 125 => 'Placenta',
(int) 126 => 'Testis'
)
),
'CIL_0007PO_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000021764' => array(
[maximum depth reached]
),
'ENSMUSG00000021765' => array(
[maximum depth reached]
),
'ENSMUSG00000042348' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Muscle',
(int) 39 => 'Ovary',
(int) 40 => 'Placenta',
(int) 41 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007PO_0003',
'tax_id' => '7955',
'chromosome' => '5',
'seq_start' => '41955922',
'seq_end' => '41956151',
'region_length' => '229',
'region_type' => 'UCNEbase',
'el_id' => 'ARL15'
)
)
$gene_el = array(
'ENSMUST00000091201' => array(
'Adipose' => array(
'average_FPKM' => '5.154',
'stddev_FPKM' => '1.78'
),
'Adrenal' => array(
'average_FPKM' => '4.650',
'stddev_FPKM' => '1.80'
),
'Bladder' => array(
'average_FPKM' => '1.826',
'stddev_FPKM' => '0.67'
),
'Brain' => array(
'average_FPKM' => '4.298',
'stddev_FPKM' => '1.36'
),
'Breast' => array(
'average_FPKM' => '2.386',
'stddev_FPKM' => '0.34'
),
'Colon' => array(
'average_FPKM' => '1.471',
'stddev_FPKM' => '0.50'
),
'Heart' => array(
'average_FPKM' => '1.635',
'stddev_FPKM' => '0.15'
),
'Kidney' => array(
'average_FPKM' => '4.206',
'stddev_FPKM' => '0.25'
),
'Liver' => array(
'average_FPKM' => '1.554',
'stddev_FPKM' => '0.70'
),
'Lung' => array(
'average_FPKM' => '8.600',
'stddev_FPKM' => '1.14'
),
'Muscle' => array(
'average_FPKM' => '0.781',
'stddev_FPKM' => '0.29'
),
'Ovary' => array(
'average_FPKM' => '3.205',
'stddev_FPKM' => '1.08'
),
'Placenta' => array(
'average_FPKM' => '3.865',
'stddev_FPKM' => '2.11'
),
'Testis' => array(
'average_FPKM' => '0.757',
'stddev_FPKM' => '0.23'
)
)
)
$gene_key = 'ENSMUSG00000042348'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '5.154',
'stddev_FPKM' => '1.78'
),
'Adrenal' => array(
'average_FPKM' => '4.650',
'stddev_FPKM' => '1.80'
),
'Bladder' => array(
'average_FPKM' => '1.826',
'stddev_FPKM' => '0.67'
),
'Brain' => array(
'average_FPKM' => '4.298',
'stddev_FPKM' => '1.36'
),
'Breast' => array(
'average_FPKM' => '2.386',
'stddev_FPKM' => '0.34'
),
'Colon' => array(
'average_FPKM' => '1.471',
'stddev_FPKM' => '0.50'
),
'Heart' => array(
'average_FPKM' => '1.635',
'stddev_FPKM' => '0.15'
),
'Kidney' => array(
'average_FPKM' => '4.206',
'stddev_FPKM' => '0.25'
),
'Liver' => array(
'average_FPKM' => '1.554',
'stddev_FPKM' => '0.70'
),
'Lung' => array(
'average_FPKM' => '8.600',
'stddev_FPKM' => '1.14'
),
'Muscle' => array(
'average_FPKM' => '0.781',
'stddev_FPKM' => '0.29'
),
'Ovary' => array(
'average_FPKM' => '3.205',
'stddev_FPKM' => '1.08'
),
'Placenta' => array(
'average_FPKM' => '3.865',
'stddev_FPKM' => '2.11'
),
'Testis' => array(
'average_FPKM' => '0.757',
'stddev_FPKM' => '0.23'
)
)
$tran_key = 'ENSMUST00000091201'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007PO_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007PO_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000134363' => 'follistatin',
'ENSG00000164258' => 'NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)',
'ENSG00000185305' => 'ADP-ribosylation factor-like 15',
'ENSG00000207627' => 'microRNA 581',
'ENSG00000217791' => 'argininosuccinate synthetase 1 pseudogene 9',
'ENSG00000222960' => 'RNA, U6 small nuclear 272, pseudogene',
'ENSG00000238508' => null,
'ENSG00000241230' => 'RNA, 7SL, cytoplasmic 801, pseudogene',
'ENSG00000250447' => null,
'ENSG00000265421' => 'microRNA 4459',
'ENSG00000272416' => null,
'ENSMUSG00000021764' => 'NADH dehydrogenase (ubiquinone) Fe-S protein 4',
'ENSMUSG00000021765' => 'follistatin',
'ENSMUSG00000042348' => 'ADP-ribosylation factor-like 15'
),
'gene_name_arr' => array(
'ENSG00000134363' => 'FST',
'ENSG00000164258' => 'NDUFS4',
'ENSG00000185305' => 'ARL15',
'ENSG00000207627' => 'MIR581',
'ENSG00000217791' => 'ASS1P9',
'ENSG00000222960' => 'RNU6-272P',
'ENSG00000238508' => 'AC024569.1',
'ENSG00000241230' => 'RN7SL801P',
'ENSG00000250447' => 'CTD-2081C10.1',
'ENSG00000265421' => 'MIR4459',
'ENSG00000272416' => 'CTD-2081C10.7',
'ENSMUSG00000021764' => 'Ndufs4',
'ENSMUSG00000021765' => 'Fst',
'ENSMUSG00000042348' => 'Arl15'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 19 => 'Bladder',
(int) 27 => 'Brain',
(int) 40 => 'Breast',
(int) 52 => 'Colon',
(int) 65 => 'Heart',
(int) 79 => 'Kidney',
(int) 93 => 'Liver',
(int) 104 => 'Lung',
(int) 115 => 'Muscle',
(int) 126 => 'Ovary',
(int) 142 => 'Placenta',
(int) 154 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 30,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000256759' => array(
'start' => '53480409',
'end' => '53487134',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FST-001'
),
'ENST00000396947' => array(
'start' => '53480626',
'end' => '53487106',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FST-003'
),
'ENST00000491717' => array(
'start' => '53482694',
'end' => '53484111',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'FST-002'
),
'ENST00000497789' => array(
'start' => '53484216',
'end' => '53486092',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FST-005'
),
'ENST00000504226' => array(
'start' => '53483611',
'end' => '53486090',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FST-004'
),
'ENST00000296684' => array(
'start' => '53560635',
'end' => '53683340',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NDUFS4-001'
),
'ENST00000502423' => array(
'start' => '53560635',
'end' => '53683138',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'NDUFS4-002'
),
'ENST00000506765' => array(
'start' => '53560675',
'end' => '53683338',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NDUFS4-005'
),
'ENST00000506974' => array(
'start' => '53560647',
'end' => '53683338',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'NDUFS4-004'
),
'ENST00000507026' => array(
'start' => '53560633',
'end' => '53683219',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'NDUFS4-003'
),
'ENST00000509443' => array(
'start' => '53646195',
'end' => '53658789',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'NDUFS4-006'
),
'ENST00000502271' => array(
'start' => '53883945',
'end' => '54310582',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ARL15-001'
),
'ENST00000504924' => array(
'start' => '53884784',
'end' => '54310573',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ARL15-004'
),
'ENST00000505383' => array(
'start' => '54154391',
'end' => '54310573',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ARL15-005'
),
'ENST00000505630' => array(
'start' => '54113133',
'end' => '54310576',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ARL15-006'
),
'ENST00000507646' => array(
'start' => '53887365',
'end' => '54310576',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ARL15-003'
),
'ENST00000510591' => array(
'start' => '53886445',
'end' => '54310415',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ARL15-002'
),
'ENST00000620747' => array(
'start' => '53884784',
'end' => '54310573',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ARL15-201'
),
'ENST00000384895' => array(
'start' => '53951504',
'end' => '53951599',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR581-201'
),
'ENST00000513426' => array(
'start' => '53859166',
'end' => '53860401',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'ASS1P9-001'
),
'ENST00000411028' => array(
'start' => '53912020',
'end' => '53912123',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-272P-201'
),
'ENST00000458939' => array(
'start' => '53609587',
'end' => '53609658',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC024569.1-201'
),
'ENST00000479462' => array(
'start' => '54048007',
'end' => '54048308',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL801P-201'
),
'ENST00000504552' => array(
'start' => '53776644',
'end' => '53819686',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2081C10.1-001'
),
'ENST00000511953' => array(
'start' => '53777014',
'end' => '53819676',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2081C10.1-002'
),
'ENST00000581837' => array(
'start' => '54075518',
'end' => '54075583',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR4459-201'
),
'ENST00000606482' => array(
'start' => '53880293',
'end' => '53881051',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2081C10.7-001'
),
'ENSMUST00000022286' => array(
'start' => '114287795',
'end' => '114388094',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ndufs4-201'
),
'ENSMUST00000022287' => array(
'start' => '114452262',
'end' => '114458730',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fst-201'
),
'ENSMUST00000091201' => array(
'start' => '113794505',
'end' => '114157461',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Arl15-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007PO_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007PO_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007PO_0001' => array(
'genes_in_region' => array(
'ENSG00000134363' => array(
[maximum depth reached]
),
'ENSG00000164258' => array(
[maximum depth reached]
),
'ENSG00000185305' => array(
[maximum depth reached]
),
'ENSG00000207627' => array(
[maximum depth reached]
),
'ENSG00000217791' => array(
[maximum depth reached]
),
'ENSG00000222960' => array(
[maximum depth reached]
),
'ENSG00000238508' => array(
[maximum depth reached]
),
'ENSG00000241230' => array(
[maximum depth reached]
),
'ENSG00000250447' => array(
[maximum depth reached]
),
'ENSG00000265421' => array(
[maximum depth reached]
),
'ENSG00000272416' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Muscle',
(int) 22 => 'Ovary',
(int) 23 => 'Placenta',
(int) 24 => 'Ovary',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Muscle',
(int) 34 => 'Ovary',
(int) 35 => 'Adipose',
(int) 36 => 'Adrenal',
(int) 37 => 'Bladder',
(int) 38 => 'Brain',
(int) 39 => 'Breast',
(int) 40 => 'Colon',
(int) 41 => 'Heart',
(int) 42 => 'Kidney',
(int) 43 => 'Liver',
(int) 44 => 'Lung',
(int) 45 => 'Muscle',
(int) 46 => 'Ovary',
(int) 47 => 'Placenta',
(int) 48 => 'Testis',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Testis',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Bladder',
(int) 58 => 'Brain',
(int) 59 => 'Heart',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Bladder',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Liver',
(int) 69 => 'Lung',
(int) 70 => 'Colon',
(int) 71 => 'Heart',
(int) 72 => 'Lung',
(int) 73 => 'Muscle',
(int) 74 => 'Bladder',
(int) 75 => 'Breast',
(int) 76 => 'Lung',
(int) 77 => 'Kidney',
(int) 78 => 'Kidney',
(int) 79 => 'Muscle',
(int) 80 => 'Ovary',
(int) 81 => 'Breast',
(int) 82 => 'Colon',
(int) 83 => 'Testis',
(int) 84 => 'Adipose',
(int) 85 => 'Adrenal',
(int) 86 => 'Brain',
(int) 87 => 'Kidney',
(int) 88 => 'Liver',
(int) 89 => 'Muscle',
(int) 90 => 'Ovary',
(int) 91 => 'Testis',
(int) 92 => 'Kidney',
(int) 93 => 'Liver',
(int) 94 => 'Ovary',
(int) 95 => 'Adrenal',
(int) 96 => 'Brain',
(int) 97 => 'Colon',
(int) 98 => 'Kidney',
(int) 99 => 'Adrenal',
(int) 100 => 'Bladder',
(int) 101 => 'Brain',
(int) 102 => 'Breast',
(int) 103 => 'Colon',
(int) 104 => 'Heart',
(int) 105 => 'Kidney',
(int) 106 => 'Liver',
(int) 107 => 'Lung',
(int) 108 => 'Placenta',
(int) 109 => 'Brain',
(int) 110 => 'Heart',
(int) 111 => 'Testis',
(int) 112 => 'Testis',
(int) 113 => 'Adrenal',
(int) 114 => 'Heart',
(int) 115 => 'Adipose',
(int) 116 => 'Adrenal',
(int) 117 => 'Brain',
(int) 118 => 'Breast',
(int) 119 => 'Colon',
(int) 120 => 'Heart',
(int) 121 => 'Kidney',
(int) 122 => 'Liver',
(int) 123 => 'Lung',
(int) 124 => 'Ovary',
(int) 125 => 'Placenta',
(int) 126 => 'Testis'
)
),
'CIL_0007PO_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000021764' => array(
[maximum depth reached]
),
'ENSMUSG00000021765' => array(
[maximum depth reached]
),
'ENSMUSG00000042348' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Muscle',
(int) 39 => 'Ovary',
(int) 40 => 'Placenta',
(int) 41 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000134363' => 'follistatin',
'ENSG00000164258' => 'NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)',
'ENSG00000185305' => 'ADP-ribosylation factor-like 15',
'ENSG00000207627' => 'microRNA 581',
'ENSG00000217791' => 'argininosuccinate synthetase 1 pseudogene 9',
'ENSG00000222960' => 'RNA, U6 small nuclear 272, pseudogene',
'ENSG00000238508' => null,
'ENSG00000241230' => 'RNA, 7SL, cytoplasmic 801, pseudogene',
'ENSG00000250447' => null,
'ENSG00000265421' => 'microRNA 4459',
'ENSG00000272416' => null,
'ENSMUSG00000021764' => 'NADH dehydrogenase (ubiquinone) Fe-S protein 4',
'ENSMUSG00000021765' => 'follistatin',
'ENSMUSG00000042348' => 'ADP-ribosylation factor-like 15'
)
$gene_name_arr = array(
'ENSG00000134363' => 'FST',
'ENSG00000164258' => 'NDUFS4',
'ENSG00000185305' => 'ARL15',
'ENSG00000207627' => 'MIR581',
'ENSG00000217791' => 'ASS1P9',
'ENSG00000222960' => 'RNU6-272P',
'ENSG00000238508' => 'AC024569.1',
'ENSG00000241230' => 'RN7SL801P',
'ENSG00000250447' => 'CTD-2081C10.1',
'ENSG00000265421' => 'MIR4459',
'ENSG00000272416' => 'CTD-2081C10.7',
'ENSMUSG00000021764' => 'Ndufs4',
'ENSMUSG00000021765' => 'Fst',
'ENSMUSG00000042348' => 'Arl15'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007PO_0001',
'tax_id' => '9606',
'chromosome' => '5',
'seq_start' => '53486896',
'seq_end' => '54215574',
'region_length' => '728678',
'region_type' => 'UCNEbase',
'el_id' => 'ARL15'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007PO_0002',
'tax_id' => '10090',
'chromosome' => '13',
'seq_start' => '113880053',
'seq_end' => '114452500',
'region_length' => '572447',
'region_type' => 'UCNEbase',
'el_id' => 'ARL15'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007PO_0003',
'tax_id' => '7955',
'chromosome' => '5',
'seq_start' => '41955922',
'seq_end' => '41956151',
'region_length' => '229',
'region_type' => 'UCNEbase',
'el_id' => 'ARL15'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 19 => 'Bladder',
(int) 27 => 'Brain',
(int) 40 => 'Breast',
(int) 52 => 'Colon',
(int) 65 => 'Heart',
(int) 79 => 'Kidney',
(int) 93 => 'Liver',
(int) 104 => 'Lung',
(int) 115 => 'Muscle',
(int) 126 => 'Ovary',
(int) 142 => 'Placenta',
(int) 154 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 30
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000256759' => array(
'start' => '53480409',
'end' => '53487134',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FST-001'
),
'ENST00000396947' => array(
'start' => '53480626',
'end' => '53487106',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FST-003'
),
'ENST00000491717' => array(
'start' => '53482694',
'end' => '53484111',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'FST-002'
),
'ENST00000497789' => array(
'start' => '53484216',
'end' => '53486092',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FST-005'
),
'ENST00000504226' => array(
'start' => '53483611',
'end' => '53486090',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FST-004'
),
'ENST00000296684' => array(
'start' => '53560635',
'end' => '53683340',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NDUFS4-001'
),
'ENST00000502423' => array(
'start' => '53560635',
'end' => '53683138',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'NDUFS4-002'
),
'ENST00000506765' => array(
'start' => '53560675',
'end' => '53683338',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NDUFS4-005'
),
'ENST00000506974' => array(
'start' => '53560647',
'end' => '53683338',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'NDUFS4-004'
),
'ENST00000507026' => array(
'start' => '53560633',
'end' => '53683219',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'NDUFS4-003'
),
'ENST00000509443' => array(
'start' => '53646195',
'end' => '53658789',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'NDUFS4-006'
),
'ENST00000502271' => array(
'start' => '53883945',
'end' => '54310582',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ARL15-001'
),
'ENST00000504924' => array(
'start' => '53884784',
'end' => '54310573',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ARL15-004'
),
'ENST00000505383' => array(
'start' => '54154391',
'end' => '54310573',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ARL15-005'
),
'ENST00000505630' => array(
'start' => '54113133',
'end' => '54310576',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ARL15-006'
),
'ENST00000507646' => array(
'start' => '53887365',
'end' => '54310576',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ARL15-003'
),
'ENST00000510591' => array(
'start' => '53886445',
'end' => '54310415',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ARL15-002'
),
'ENST00000620747' => array(
'start' => '53884784',
'end' => '54310573',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ARL15-201'
),
'ENST00000384895' => array(
'start' => '53951504',
'end' => '53951599',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR581-201'
),
'ENST00000513426' => array(
'start' => '53859166',
'end' => '53860401',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'ASS1P9-001'
),
'ENST00000411028' => array(
'start' => '53912020',
'end' => '53912123',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-272P-201'
),
'ENST00000458939' => array(
'start' => '53609587',
'end' => '53609658',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC024569.1-201'
),
'ENST00000479462' => array(
'start' => '54048007',
'end' => '54048308',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL801P-201'
),
'ENST00000504552' => array(
'start' => '53776644',
'end' => '53819686',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2081C10.1-001'
),
'ENST00000511953' => array(
'start' => '53777014',
'end' => '53819676',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2081C10.1-002'
),
'ENST00000581837' => array(
'start' => '54075518',
'end' => '54075583',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR4459-201'
),
'ENST00000606482' => array(
'start' => '53880293',
'end' => '53881051',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2081C10.7-001'
),
'ENSMUST00000022286' => array(
'start' => '114287795',
'end' => '114388094',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ndufs4-201'
),
'ENSMUST00000022287' => array(
'start' => '114452262',
'end' => '114458730',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fst-201'
),
'ENSMUST00000091201' => array(
'start' => '113794505',
'end' => '114157461',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Arl15-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007PO_0001' => array(
'genes_in_region' => array(
'ENSG00000134363' => array(
[maximum depth reached]
),
'ENSG00000164258' => array(
[maximum depth reached]
),
'ENSG00000185305' => array(
[maximum depth reached]
),
'ENSG00000207627' => array(
[maximum depth reached]
),
'ENSG00000217791' => array(
[maximum depth reached]
),
'ENSG00000222960' => array(
[maximum depth reached]
),
'ENSG00000238508' => array(
[maximum depth reached]
),
'ENSG00000241230' => array(
[maximum depth reached]
),
'ENSG00000250447' => array(
[maximum depth reached]
),
'ENSG00000265421' => array(
[maximum depth reached]
),
'ENSG00000272416' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Muscle',
(int) 22 => 'Ovary',
(int) 23 => 'Placenta',
(int) 24 => 'Ovary',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Muscle',
(int) 34 => 'Ovary',
(int) 35 => 'Adipose',
(int) 36 => 'Adrenal',
(int) 37 => 'Bladder',
(int) 38 => 'Brain',
(int) 39 => 'Breast',
(int) 40 => 'Colon',
(int) 41 => 'Heart',
(int) 42 => 'Kidney',
(int) 43 => 'Liver',
(int) 44 => 'Lung',
(int) 45 => 'Muscle',
(int) 46 => 'Ovary',
(int) 47 => 'Placenta',
(int) 48 => 'Testis',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Testis',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Bladder',
(int) 58 => 'Brain',
(int) 59 => 'Heart',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Bladder',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Liver',
(int) 69 => 'Lung',
(int) 70 => 'Colon',
(int) 71 => 'Heart',
(int) 72 => 'Lung',
(int) 73 => 'Muscle',
(int) 74 => 'Bladder',
(int) 75 => 'Breast',
(int) 76 => 'Lung',
(int) 77 => 'Kidney',
(int) 78 => 'Kidney',
(int) 79 => 'Muscle',
(int) 80 => 'Ovary',
(int) 81 => 'Breast',
(int) 82 => 'Colon',
(int) 83 => 'Testis',
(int) 84 => 'Adipose',
(int) 85 => 'Adrenal',
(int) 86 => 'Brain',
(int) 87 => 'Kidney',
(int) 88 => 'Liver',
(int) 89 => 'Muscle',
(int) 90 => 'Ovary',
(int) 91 => 'Testis',
(int) 92 => 'Kidney',
(int) 93 => 'Liver',
(int) 94 => 'Ovary',
(int) 95 => 'Adrenal',
(int) 96 => 'Brain',
(int) 97 => 'Colon',
(int) 98 => 'Kidney',
(int) 99 => 'Adrenal',
(int) 100 => 'Bladder',
(int) 101 => 'Brain',
(int) 102 => 'Breast',
(int) 103 => 'Colon',
(int) 104 => 'Heart',
(int) 105 => 'Kidney',
(int) 106 => 'Liver',
(int) 107 => 'Lung',
(int) 108 => 'Placenta',
(int) 109 => 'Brain',
(int) 110 => 'Heart',
(int) 111 => 'Testis',
(int) 112 => 'Testis',
(int) 113 => 'Adrenal',
(int) 114 => 'Heart',
(int) 115 => 'Adipose',
(int) 116 => 'Adrenal',
(int) 117 => 'Brain',
(int) 118 => 'Breast',
(int) 119 => 'Colon',
(int) 120 => 'Heart',
(int) 121 => 'Kidney',
(int) 122 => 'Liver',
(int) 123 => 'Lung',
(int) 124 => 'Ovary',
(int) 125 => 'Placenta',
(int) 126 => 'Testis'
)
),
'CIL_0007PO_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000021764' => array(
[maximum depth reached]
),
'ENSMUSG00000021765' => array(
[maximum depth reached]
),
'ENSMUSG00000042348' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Muscle',
(int) 39 => 'Ovary',
(int) 40 => 'Placenta',
(int) 41 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007PO_0003',
'tax_id' => '7955',
'chromosome' => '5',
'seq_start' => '41955922',
'seq_end' => '41956151',
'region_length' => '229',
'region_type' => 'UCNEbase',
'el_id' => 'ARL15'
)
)
$gene_el = array(
'ENSMUST00000091201' => array(
'Adipose' => array(
'average_FPKM' => '5.154',
'stddev_FPKM' => '1.78'
),
'Adrenal' => array(
'average_FPKM' => '4.650',
'stddev_FPKM' => '1.80'
),
'Bladder' => array(
'average_FPKM' => '1.826',
'stddev_FPKM' => '0.67'
),
'Brain' => array(
'average_FPKM' => '4.298',
'stddev_FPKM' => '1.36'
),
'Breast' => array(
'average_FPKM' => '2.386',
'stddev_FPKM' => '0.34'
),
'Colon' => array(
'average_FPKM' => '1.471',
'stddev_FPKM' => '0.50'
),
'Heart' => array(
'average_FPKM' => '1.635',
'stddev_FPKM' => '0.15'
),
'Kidney' => array(
'average_FPKM' => '4.206',
'stddev_FPKM' => '0.25'
),
'Liver' => array(
'average_FPKM' => '1.554',
'stddev_FPKM' => '0.70'
),
'Lung' => array(
'average_FPKM' => '8.600',
'stddev_FPKM' => '1.14'
),
'Muscle' => array(
'average_FPKM' => '0.781',
'stddev_FPKM' => '0.29'
),
'Ovary' => array(
'average_FPKM' => '3.205',
'stddev_FPKM' => '1.08'
),
'Placenta' => array(
'average_FPKM' => '3.865',
'stddev_FPKM' => '2.11'
),
'Testis' => array(
'average_FPKM' => '0.757',
'stddev_FPKM' => '0.23'
)
)
)
$gene_key = 'ENSMUSG00000042348'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '5.154',
'stddev_FPKM' => '1.78'
),
'Adrenal' => array(
'average_FPKM' => '4.650',
'stddev_FPKM' => '1.80'
),
'Bladder' => array(
'average_FPKM' => '1.826',
'stddev_FPKM' => '0.67'
),
'Brain' => array(
'average_FPKM' => '4.298',
'stddev_FPKM' => '1.36'
),
'Breast' => array(
'average_FPKM' => '2.386',
'stddev_FPKM' => '0.34'
),
'Colon' => array(
'average_FPKM' => '1.471',
'stddev_FPKM' => '0.50'
),
'Heart' => array(
'average_FPKM' => '1.635',
'stddev_FPKM' => '0.15'
),
'Kidney' => array(
'average_FPKM' => '4.206',
'stddev_FPKM' => '0.25'
),
'Liver' => array(
'average_FPKM' => '1.554',
'stddev_FPKM' => '0.70'
),
'Lung' => array(
'average_FPKM' => '8.600',
'stddev_FPKM' => '1.14'
),
'Muscle' => array(
'average_FPKM' => '0.781',
'stddev_FPKM' => '0.29'
),
'Ovary' => array(
'average_FPKM' => '3.205',
'stddev_FPKM' => '1.08'
),
'Placenta' => array(
'average_FPKM' => '3.865',
'stddev_FPKM' => '2.11'
),
'Testis' => array(
'average_FPKM' => '0.757',
'stddev_FPKM' => '0.23'
)
)
$tran_key = 'ENSMUST00000091201'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(FST)