C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nidogen 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022340 Nid2-201 ENSMUSG00000021806 10090 + 14:19751257-19811787 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000022340
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000022340 27.471±10.62 6.467±2.14 3.773±0.74 7.206±2.89 10.374±3.81 2.709±0.39 4.106±0.26 6.611±1.81 3.001±1.56 1.674±0.55 13.415±2.61 26.873±11.74 2.442±0.69

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005604 IPI basement membrane
GO:0007160 IDA cell-matrix adhesion
GO:0009986 IEA cell surface
GO:0031012 IDA extracellular matrix
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216286 NID2-001 protein_coding Homo_sapiens 0 2889
ENST00000261700 C14orf166-001 protein_coding Homo_sapiens 0 235
ENST00000541773 NID2-201 protein_coding Homo_sapiens 0 2889
ENST00000553297 NID2-006 retained_intron Homo_sapiens 0 534
ENST00000555310 NID2-007 retained_intron Homo_sapiens 0 610
ENST00000556572 NID2-004 protein_coding Homo_sapiens 0 1587
ENST00000556686 NID2-008 retained_intron Homo_sapiens 0 339
ENST00000557051 NID2-005 retained_intron Homo_sapiens 0 427
ENST00000617139 NID2-202 protein_coding Homo_sapiens 0 2693

Loading