C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 2700060E02 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022341 2700060E02Rik-201 ENSMUSG00000021807 10090 - 14:19811402-19823823 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022341
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022341 15.313±0.00 16.223±4.84 35.168±18.45 21.552±4.50 16.946±1.77 17.122±6.26 18.293±3.84 25.556±5.73 23.840±9.73 10.735±3.17 43.617±8.86 34.115±13.13 57.900±19.37 31.034±13.19

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000993 ISS RNA polymerase II core binding
GO:0003723 ISS RNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006351 IEA transcription, DNA-templated
GO:0006388 ISS tRNA splicing, via endonucleolytic cleavage and ligation
GO:0015629 IEA actin cytoskeleton
GO:0042802 IEA identical protein binding
GO:0044822 IEA poly(A) RNA binding
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0072669 ISS tRNA-splicing ligase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261700 C14orf166-001 protein_coding Homo_sapiens 0 1242
ENST00000427559 AC104651.2-001 processed_pseudogene Homo_sapiens 0 920
ENST00000507713 CTD-2538A21.1-001 processed_pseudogene Homo_sapiens 0 702
ENST00000553362 C14orf166-007 protein_coding Homo_sapiens 0 472
ENST00000553479 C14orf166-005 retained_intron Homo_sapiens 0 388
ENST00000553707 C14orf166-003 retained_intron Homo_sapiens 0 224
ENST00000556760 C14orf166-006 protein_coding Homo_sapiens 0 778
ENST00000557553 C14orf166-002 nonsense_mediated_decay Homo_sapiens 0 379

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