C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, ATPase, 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022380 Psmc6-201 ENSMUSG00000021832 10090 + 14:45329824-45349071 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022380
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022380 18.580±3.18 6.352±0.81 38.031±2.21 35.757±6.34 16.384±5.33 10.265±1.93 23.448±1.39 16.548±4.72 34.139±16.11 17.711±3.61 31.358±3.95 17.947±17.46 53.640±19.59 15.751±4.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GM CIL_0005GM_0002 CGP 14:45283092-45349071
CIL_0005GN CIL_0005GN_0002 CGP 14:45329824-45373585

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0016020 IEA membrane
GO:0016234 IEA inclusion body
GO:0016787 IEA hydrolase activity
GO:0022624 IDA proteasome accessory complex
GO:0030163 IEA protein catabolic process
GO:0031597 IEA cytosolic proteasome complex
GO:0070062 IEA extracellular vesicular exosome
GO:0090261 IEA positive regulation of inclusion body assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000053834 psmc6-001 protein_coding Danio_rerio 0 780
ENST00000216407 RP11-81H14.3-001 processed_pseudogene Homo_sapiens 0 1487
ENST00000435260 RP11-446E9.1-001 processed_pseudogene Homo_sapiens 0 1676
ENST00000445930 PSMC6-001 protein_coding Homo_sapiens 0 1954
ENST00000458604 PSMC6-009 retained_intron Homo_sapiens 0 575
ENST00000504847 RP11-1084J3.1-001 processed_pseudogene Homo_sapiens 0 1125
ENST00000551328 PSMC6-014 retained_intron Homo_sapiens 0 302
ENST00000553798 PSMC6-006 nonsense_mediated_decay Homo_sapiens 5.99756e-43 178
ENST00000553899 PSMC6-002 nonsense_mediated_decay Homo_sapiens 0 532
ENST00000554044 PSMC6-005 nonsense_mediated_decay Homo_sapiens 0 628
ENST00000554952 PSMC6-008 processed_transcript Homo_sapiens 0 394
ENST00000554956 PSMC6-004 retained_intron Homo_sapiens 0 331
ENST00000555175 PSMC6-012 nonsense_mediated_decay Homo_sapiens 0 488
ENST00000555339 PSMC6-016 protein_coding Homo_sapiens 0 693
ENST00000555887 PSMC6-003 retained_intron Homo_sapiens 0 405
ENST00000556813 PSMC6-017 protein_coding Homo_sapiens 0 1013
ENST00000557085 PSMC6-011 retained_intron Homo_sapiens 0 385
ENST00000557240 PSMC6-015 nonsense_mediated_decay Homo_sapiens 0 481
ENST00000557517 PSMC6-007 nonsense_mediated_decay Homo_sapiens 5.99756e-43 178
ENST00000557557 PSMC6-010 processed_transcript Homo_sapiens 0 484
ENST00000557632 PSMC6-013 retained_intron Homo_sapiens 0 390
ENST00000571784 RP11-312B18.1-001 processed_pseudogene Homo_sapiens 0 453
ENST00000606149 PSMC6-018 protein_coding Homo_sapiens 0 1941
ENST00000612399 PSMC6-201 protein_coding Homo_sapiens 0 1954

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