C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, ATPase, 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000053834 psmc6-001 ENSDARG00000037038 7955 + 20:9944195-9957165 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000053834
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000053834 25.071±14.47 19.340±9.84 40.831±0.00 3.018±0.00 24.355±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000502 IEA proteasome complex
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0006508 IEA proteolysis
GO:0008233 IEA peptidase activity
GO:0009378 IEA four-way junction helicase activity
GO:0016787 IEA hydrolase activity
GO:0016887 IEA ATPase activity
GO:0017111 IEA nucleoside-triphosphatase activity
GO:0030163 IEA protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022380 Psmc6-201 protein_coding Mus_musculus 0 780
ENST00000157812 PSMC4-001 protein_coding Homo_sapiens 8e-21 106
ENST00000435260 RP11-446E9.1-001 processed_pseudogene Homo_sapiens 0 754
ENST00000455878 PSMC4-002 protein_coding Homo_sapiens 7e-21 106
ENST00000593455 PSMC4-003 retained_intron Homo_sapiens 0.0000006 60
ENST00000601194 PSMC4-005 retained_intron Homo_sapiens 0.0000002 60
ENST00000601697 PSMC4-004 retained_intron Homo_sapiens 8e-21 106

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