C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, non-receptor type 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022508 Ptpn20-201 ENSMUSG00000021940 10090 + 14:33589270-33640754 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022508
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022508 0.017±0.00 0.096±0.04 0.026±0.01 0.036±0.01 0.027±0.00 0.041±0.00 0.024±0.00 0.021±0.01 0.046±0.03 0.211±0.05 0.010±0.00 0.107±0.05 0.161±0.05 23.308±9.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BW CIL_0007BW_0003 CGP 14:33377898-33640754
CIL_0006FW CIL_0006FW_0003 CGP 14:33589270-33935280

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0035335 IEA peptidyl-tyrosine dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000374218 PTPN20A-201 protein_coding Homo_sapiens 0 837
ENST00000374339 PTPN20A-001 protein_coding Homo_sapiens 0 841
ENST00000395721 PTPN20A-007 protein_coding Homo_sapiens 0 837
ENST00000395727 PTPN20A-004 protein_coding Homo_sapiens 0 713
ENST00000437863 PTPN20A-019 nonsense_mediated_decay Homo_sapiens 0 837
ENST00000505814 PTPN20A-005 protein_coding Homo_sapiens 0 837
ENST00000506080 PTPN20A-009 protein_coding Homo_sapiens 0 837
ENST00000510335 PTPN20A-021 nonsense_mediated_decay Homo_sapiens 0 713
ENST00000511769 PTPN20A-006 protein_coding Homo_sapiens 0 837
ENST00000513156 PTPN20A-003 protein_coding Homo_sapiens 0 368
ENST00000513266 PTPN20A-011 protein_coding Homo_sapiens 0 368
ENST00000614090 PTPN20CP-002 unprocessed_pseudogene Homo_sapiens 0 243

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