C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: elongator acetyltransferase complex subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022609 Elp3-201 ENSMUSG00000022031 10090 - 14:65530446-65593112 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022609
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022609 18.756±4.54 17.042±1.77 17.271±1.27 30.191±6.57 11.753±5.64 9.824±1.76 10.734±0.36 14.131±1.39 9.500±2.98 13.930±1.53 15.711±1.56 20.842±4.42 21.441±6.32 5.873±1.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000935 CIL_000935_0002 VISTA 14:64945073-65546192
CIL_0009DK CIL_0009DK_0002 VISTA 14:65449305-66050499

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004402 IEA histone acetyltransferase activity
GO:0005515 IEA protein binding
GO:0005730 IEA nucleolus
GO:0005737 ISS cytoplasm
GO:0006357 ISS regulation of transcription from RNA polymerase II promoter
GO:0006368 IEA transcription elongation from RNA polymerase II promoter
GO:0008023 ISS transcription elongation factor complex
GO:0008607 ISS phosphorylase kinase regulator activity
GO:0016573 IEA histone acetylation
GO:0016591 IEA DNA-directed RNA polymerase II, holoenzyme
GO:0030335 IMP positive regulation of cell migration
GO:0033588 ISS Elongator holoenzyme complex
GO:0045859 IEA regulation of protein kinase activity
GO:0046872 IEA metal ion binding
GO:0051536 IEA iron-sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000256398 ELP3-001 protein_coding Homo_sapiens 0 1971
ENST00000380353 ELP3-201 protein_coding Homo_sapiens 0 1681
ENST00000518112 ELP3-004 nonsense_mediated_decay Homo_sapiens 0 1681
ENST00000519261 ELP3-005 nonsense_mediated_decay Homo_sapiens 0 1495
ENST00000520270 ELP3-009 protein_coding Homo_sapiens 0 462
ENST00000520288 ELP3-007 protein_coding Homo_sapiens 0 555
ENST00000521015 ELP3-010 protein_coding Homo_sapiens 0 1969
ENST00000521099 ELP3-008 protein_coding Homo_sapiens 0 429
ENST00000521570 ELP3-011 protein_coding Homo_sapiens 0 758
ENST00000521938 ELP3-012 retained_intron Homo_sapiens 0 573
ENST00000522063 ELP3-019 processed_transcript Homo_sapiens 0 438
ENST00000523357 ELP3-017 protein_coding Homo_sapiens 0 425
ENST00000523687 ELP3-002 nonsense_mediated_decay Homo_sapiens 0 1495
ENST00000523760 ELP3-014 processed_transcript Homo_sapiens 0 760
ENST00000524103 ELP3-003 protein_coding Homo_sapiens 0 1845
ENST00000537665 ELP3-202 protein_coding Homo_sapiens 0 1495

Loading