C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: establishment of cohesion 1 homolog 2 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022613 Esco2-001 ENSMUSG00000022034 10090 - 14:65819038-65833994 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022613
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022613 0.250±0.20 0.167±0.04 0.255±0.01 0.940±0.69 0.099±0.04 0.388±0.10 0.050±0.02 0.042±0.01 8.097±4.65 0.113±0.01 0.026±0.01 0.828±0.94 3.633±2.81 0.832±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DK CIL_0009DK_0002 VISTA 14:65449305-66050499

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 ISS chromatin
GO:0001741 IDA XY body
GO:0002244 IGI hematopoietic progenitor cell differentiation
GO:0004468 IMP lysine N-acetyltransferase activity, acting on acetyl phosphate as donor
GO:0005634 IEA nucleus
GO:0005794 IEA Golgi apparatus
GO:0006275 ISS regulation of DNA replication
GO:0006302 IMP double-strand break repair
GO:0007049 IEA cell cycle
GO:0007059 IMP chromosome segregation
GO:0010369 IDA chromocenter
GO:0031618 IDA nuclear pericentric heterochromatin
GO:0034421 IEA post-translational protein acetylation
GO:0035861 IDA site of double-strand break
GO:0046872 IEA metal ion binding
GO:0071168 IMP protein localization to chromatin

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000305188 ESCO2-001 protein_coding Homo_sapiens 0 898
ENST00000397418 ESCO2-201 protein_coding Homo_sapiens 0 806
ENST00000522378 ESCO2-002 nonsense_mediated_decay Homo_sapiens 0 699
ENST00000523910 ESCO2-007 processed_transcript Homo_sapiens 0 337
ENST00000524293 ESCO2-003 retained_intron Homo_sapiens 0 390

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