C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuroguidin, EIF4E binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022815 Ngdn-201 ENSMUSG00000022204 10090 + 14:55015454-55024135 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022815
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022815 6.876±1.48 1.307±0.79 19.834±1.16 13.942±2.52 5.813±0.76 5.868±1.70 5.578±1.03 8.000±0.49 12.663±10.89 5.880±2.61 8.148±1.37 9.095±6.41 25.999±8.23 6.290±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0002 VISTA 14:54638004-55241428
CIL_0009BW CIL_0009BW_0002 VISTA 14:54696106-55297707
CIL_0008Q4 CIL_0008Q4_0002 VISTA 14:54696894-55297224
CIL_0008QH CIL_0008QH_0002 VISTA 14:54703667-55304830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000775 IEA chromosome, centromeric region
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006417 IEA regulation of translation
GO:0042995 IEA cell projection
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000397154 NGDN-002 protein_coding Homo_sapiens 0 1027
ENST00000408901 NGDN-001 protein_coding Homo_sapiens 0 1088
ENST00000553336 NGDN-011 retained_intron Homo_sapiens 0 235
ENST00000555128 NGDN-010 protein_coding Homo_sapiens 0 577
ENST00000556022 NGDN-013 retained_intron Homo_sapiens 0 678

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