C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD21 homolog (S. pombe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022927 Rad21-201 ENSMUSG00000022314 10090 - 15:51962605-51991760 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022927
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022927 12.947±3.22 5.487±2.20 21.070±0.51 34.244±2.66 10.121±2.32 14.364±2.53 10.678±0.50 18.676±0.88 26.669±23.49 17.767±2.50 11.645±1.57 19.499±13.22 59.476±19.05 1.707±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004H8 CIL_0004H8_0002 CGP 15:51877429-51991760
CIL_0005RT CIL_0005RT_0002 CGP 15:51962605-52045722

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000775 IEA chromosome, centromeric region
GO:0000785 IDA chromatin
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006281 IEA DNA repair
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006915 IEA apoptotic process
GO:0007059 IEA chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0008278 IDA cohesin complex
GO:0016020 IEA membrane
GO:0034991 IDA nuclear meiotic cohesin complex
GO:0071168 ISS protein localization to chromatin

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000005927 rad21a-201 protein_coding Danio_rerio 0 431
ENSDART00000141248 rad21a-001 protein_coding Danio_rerio 0 422
ENSDART00000122963 rad21a-202 protein_coding Danio_rerio 0 420
ENST00000297338 RAD21-001 protein_coding Homo_sapiens 0 2721
ENST00000517485 RAD21-005 protein_coding Homo_sapiens 0 806
ENST00000517749 RAD21-009 protein_coding Homo_sapiens 0 523
ENST00000518055 RAD21-010 protein_coding Homo_sapiens 0 785
ENST00000519837 RAD21-011 protein_coding Homo_sapiens 0 499
ENST00000520992 RAD21-006 protein_coding Homo_sapiens 0 811
ENST00000522699 RAD21-004 protein_coding Homo_sapiens 0 490
ENST00000523547 RAD21-007 processed_transcript Homo_sapiens 0 787
ENST00000523986 RAD21-003 protein_coding Homo_sapiens 0 778

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