C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: block of proliferation 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023217 Bop1-201 ENSMUSG00000022557 10090 - 15:76452996-76477269 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023217
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023217 35.760±3.14 58.903±0.26 23.867±2.94 38.148±11.81 32.535±10.60 35.267±10.87 13.735±3.95 22.948±4.44 24.325±8.42 31.843±0.83 9.567±1.04 46.133±16.36 34.212±17.32 28.939±9.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0002 VISTA 15:76102685-76704351
CIL_00026T CIL_00026T_0002 CGP 15:76380261-76477269
CIL_0006M5 CIL_0006M5_0003 CGP 15:76452996-76477269

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000448 IMP cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463 ISS maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 IPI protein binding
GO:0005730 IDA nucleolus
GO:0006364 IMP rRNA processing
GO:0008283 IMP cell proliferation
GO:0030529 ISO ribonucleoprotein complex
GO:0030687 IEA preribosome, large subunit precursor
GO:0042273 IMP ribosomal large subunit biogenesis
GO:0043021 IDA ribonucleoprotein complex binding
GO:0044822 IEA poly(A) RNA binding
GO:0051726 ISS regulation of cell cycle
GO:0070545 ISS PeBoW complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000568812 BOP1-006 retained_intron Homo_sapiens 0 331
ENST00000569669 BOP1-001 protein_coding Homo_sapiens 0 1905

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