C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: block of proliferation 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000569669 BOP1-001 ENSG00000261236 9606 - 8:144262102-144291370 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000569669
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000569669 9.869±0.00 22.410±0.00 0.422±0.00 6.331±3.38 8.279±6.19 15.078±0.00 3.618±3.49 4.519±3.74 10.261±0.00 4.742±3.93 38.041±37.64 28.094±21.36 16.219±2.00 26.078±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0001 VISTA 8:143880613-144482307
CIL_00026T CIL_00026T_0001 CGP 8:144148016-144291370
CIL_0006M5 CIL_0006M5_0002 CGP 8:144262102-144291370

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000448 IEA cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463 IMP maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 IPI:IEA protein binding
GO:0005730 IEA nucleolus
GO:0006364 IEA rRNA processing
GO:0008283 NAS cell proliferation
GO:0030529 IDA ribonucleoprotein complex
GO:0030687 IEA preribosome, large subunit precursor
GO:0042254 NAS ribosome biogenesis
GO:0042273 IEA ribosomal large subunit biogenesis
GO:0043021 IEA ribonucleoprotein complex binding
GO:0044822 IDA poly(A) RNA binding
GO:0051726 IMP regulation of cell cycle
GO:0070545 IDA PeBoW complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023217 Bop1-201 protein_coding Mus_musculus 0 1905

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