C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RRN3 RNA polymerase I transcription factor homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023363 Rrn3-201 ENSMUSG00000022682 10090 + 16:13780699-13814840 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023363
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023363 10.150±1.77 9.889±3.30 13.438±2.84 17.656±9.93 6.151±1.61 4.112±1.22 8.608±0.88 5.457±0.99 5.628±1.86 5.927±0.35 9.791±0.39 9.046±2.03 10.203±2.28 3.223±0.78

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006352 IDA DNA-templated transcription, initiation
GO:0006361 IMP transcription initiation from RNA polymerase I promoter
GO:0007000 IMP nucleolus organization
GO:0007028 IMP cytoplasm organization
GO:0008283 IMP cell proliferation
GO:0042254 IMP ribosome biogenesis
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0048872 IMP homeostasis of number of cells
GO:0070063 IDA RNA polymerase binding
GO:1902254 IMP negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator
GO:2000142 IDA regulation of DNA-templated transcription, initiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000198767 RRN3-001 protein_coding Homo_sapiens 0 2106
ENST00000327307 RRN3-003 protein_coding Homo_sapiens 0 2052
ENST00000427965 RRN3P2-002 processed_transcript Homo_sapiens 0 787
ENST00000429751 RRN3-004 protein_coding Homo_sapiens 0 1757
ENST00000514813 RRN3P1-004 processed_transcript Homo_sapiens 0 523
ENST00000546471 RRN3P1-002 processed_transcript Homo_sapiens 0 523
ENST00000549207 RRN3P3-002 transcribed_unprocessed_pseudogene Homo_sapiens 0 691
ENST00000551681 RRN3P1-003 processed_transcript Homo_sapiens 0 623
ENST00000551766 RRN3P3-001 processed_transcript Homo_sapiens 0 697
ENST00000551901 RRN3P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 961
ENST00000563559 RRN3-002 protein_coding Homo_sapiens 0 2080
ENST00000564131 RRN3-005 protein_coding Homo_sapiens 0 983
ENST00000564580 RRN3P2-001 processed_transcript Homo_sapiens 0 667
ENST00000566038 RRN3P2-004 transcribed_unprocessed_pseudogene Homo_sapiens 0 957
ENST00000569045 CDR2-006 processed_transcript Homo_sapiens 0 693
ENST00000616334 RRN3-201 protein_coding Homo_sapiens 0 2106

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