C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rotatin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023828 Rttn-201 ENSMUSG00000023066 10090 + 18:88971790-89131013 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023828
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023828 0.659±0.02 0.398±0.14 0.806±0.16 1.133±0.78 1.012±0.08 0.711±0.26 0.607±0.06 0.497±0.17 0.688±0.52 1.056±0.31 0.148±0.05 1.340±0.39 0.907±0.47 1.513±0.75

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0007368 IMP determination of left/right symmetry
GO:0016021 ISS integral component of membrane
GO:0036064 ISS ciliary basal body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255674 RTTN-001 protein_coding Homo_sapiens 0 6416
ENST00000581161 RTTN-003 nonsense_mediated_decay Homo_sapiens 0 3589
ENST00000581583 RTTN-002 retained_intron Homo_sapiens 0 1923
ENST00000583043 RTTN-004 nonsense_mediated_decay Homo_sapiens 0 3068
ENST00000584659 RTTN-007 processed_transcript Homo_sapiens 0 798

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