C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 4921501E09 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024121 4921501E09Rik-201 ENSMUSG00000023350 10090 - 17:33064143-33068058 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000024121
Transcript ID Testis
ENSMUST00000024121 4.558±0.20

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 ISS G1/S transition of mitotic cell cycle
GO:0003682 ISS chromatin binding
GO:0005506 ISS iron ion binding
GO:0005634 ISS nucleus
GO:0005730 ISS nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0007420 ISS brain development
GO:0008270 ISS zinc ion binding
GO:0016706 ISS oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0032452 ISS histone demethylase activity
GO:0032454 ISS histone demethylase activity (H3-K9 specific)
GO:0033169 ISS histone H3-K9 demethylation
GO:0035064 ISS methylated histone binding
GO:0035574 ISS histone H4-K20 demethylation
GO:0035575 ISS histone demethylase activity (H4-K20 specific)
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045943 ISS positive regulation of transcription from RNA polymerase I promoter
GO:0051864 ISS histone demethylase activity (H3-K36 specific)
GO:0055114 IEA oxidation-reduction process
GO:0061188 ISS negative regulation of chromatin silencing at rDNA
GO:0070544 ISS histone H3-K36 demethylation
GO:0071557 ISS histone H3-K27 demethylation
GO:0071558 ISS histone demethylase activity (H3-K27 specific)

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000098759 setd8a-201 protein_coding Danio_rerio 0.0001 53
ENST00000322659 PHF8-002 protein_coding Homo_sapiens 0 1404
ENST00000338154 PHF8-003 protein_coding Homo_sapiens 0 1604
ENST00000338946 PHF8-201 protein_coding Homo_sapiens 0 1138
ENST00000357988 PHF8-001 protein_coding Homo_sapiens 0 1604
ENST00000396282 PHF8-007 protein_coding Homo_sapiens 0 1413
ENST00000413386 PHF8-008 nonsense_mediated_decay Homo_sapiens 0 427
ENST00000443302 PHF8-006 protein_coding Homo_sapiens 0 1055
ENST00000490635 PHF8-015 retained_intron Homo_sapiens 0 588
ENST00000615775 PHF8-202 protein_coding Homo_sapiens 0 1051

Loading